Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00550 GAAAGTTGAGAAAATTGAAATTGAAAGTTAAATAAATACTAAATGGTGTCAGAGGTTAGGGGCAAGTGGGATCTGGATCCGAACATCATAAGGCATAAGGCATAAGGCATAAGGCACAAGGGACACCGCATGCTCTCTGGCTCAAGTGAGGTATTGCATTGGGAGAGAGAGAGATAGAGAGATATAGAGAATGAGAAATAGTAGTAGCTCTAGCTCAAGCTCAAGCTCACCTCTGAGCTCTCACCTTCACCCCCCTAAAACACACTCACTCCTCACTCAACCCAATTGATGCTTCTGCTCCCACCATATTATAACCATTTACCAAGGCGGTTCTTTTGCTTTTCTAGTAACTTCACTACCATTGTTTTTCTGTTTCAGCCTTCCAATTCAAACCCAACCCATCCCAAGATTCTCACTTTCTTATCTTCCTTTCATGGGAATATGAGAAAGAAACTCACTGTGCCACCACTTATCTCAATTTGGTAGGTAGGCCTTATGTGTGGTTGAGAAAGAAACTTTACTTGTAACAGGACTGAGAAAGGTGACCTCTAGACCATAGGGAAAGACTCTATTGAAAAAACAAATTTGATTTTTAGGAATAAGCTAGTTTTTTGAGGAACCAAGTAGCAATCTCTTTTTTCTTCACTCATGGATGGTTACGAAGCTACAAGAATTGTGTTTTCTAGGATCCAAAGCTTGGACCCTGAAAATGCTTCCAAAATCATGGGTGTACTTCTTCTTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGTCCAGAAGCACTTGTGCACTCCGTGATTGTCAAAGCCCGCAAGGAGTTGGGTTTACCTTCCAACTCTCCGCCCACACCCTCTACTCCTCCTTCTCCTTCTCCCTTCCTTTCTAGGCAAAGCTCTACTTCTTCAAGGCTTAGTGGTATCAACCTCCCTCCTTCTCTCGCTATCCCAAACCCTTCTACTTCTACTTCATGGCCTACCATGTCTGAGCTTCAATCCTCAGATGATTTGATGAGCCCTAACCATTTGCTTCTTGGTTCTTCCACTTCTTCGTCTTCCTTACCCTTCTATGCAAACGGAGGCTCAGATCCAATTGATGAATTCCAACTTCAAGACCAGCTTTCTTTCCTCAATGATGGTTCGCCCACTAGTACTGCTCTTGCCCACAAGAACAGCCCTGATTTCTTTTACCCTCCTCACTCAGACTTGTCTTCAAGTCCTACTGCTGCTGACCCTACCCTCTTTCCTTCCTACGCTTGGGGAGGCTCTCTTCATCGCCGGAGTTGCTCAGTTAATGATGCTTGTTTGGGCTCTGAGGACCCTAATTCTGGTTTGGGATGGAAGCCTTGTCTTTACTTTGCTAGAGGCTATTGTAAGAATGGCACAAGTTGCAGGTTTCTTCATGGTGGACTTGGAGATGCTGATGGTTCTGCTGCAATGGTGGGTTCACCTAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTAAGATCCAAATCTGCCCAGCAACAAAGATTGGCTGCTGCTTCTCAGCTCATGGCCACTTCCACTTTTCCATACTCTCCGAAATGCATGAATTTCCTGTTGCAGCAGCAGCAACAGAATGATAGTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTTTGAACAGTCCTGGAATGGTTAACCCAGCTTCCAGACAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCAGTCCAAGATGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTTACCTTTGTTTATCCGGAGACTGTGAAGCTTATTCTATCTAAAGGAAACCCTCATTTTGTGTGTGATGCTAGAGTGCTGGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGAAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCGTGTGGTACTCCTACTGGACTAGATGCCAGAGACCAATTTGATCTTCAACTTGGTGGCAGAATGTTGTACAATACTCAAGACATGCTGTGGAGGAGGAAACTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAACTTCAAAGTAGGAGGCTTATGGGTCTGCAACTTCTCGACATCAAGAAGCATCACCAGCGTGCTCTCTCCACTGGAAGTCCAATTCCTTCGCCCACCCAGTCTCCTAACATATTCAATCAAAATCTTGTTCTTCCTTCTTTTCACATCAGTTCAGAGGCCCCAATTGAGAGTGGTTCAATTTCTGCTCCAGCTAGTACTGCATCCATTTCTTCTAGTCAACAGCCAGTCAACATTTCTGTTAGCAAGGAAATGGTGGTCAACGGGGTGAATGCATATGACGAAGGCAATGGGAAGGAAAGCTCTAATCATGAAGATCGGGTTTTGCAAGAATGGTATAAAATTTGTGTCTCATGTAGAATTTCTAAAAGGGCACAAGAATAG 2541 0.4427 MDGYEATRIVFSRIQSLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVIVKARKELGLPSNSPPTPSTPPSPSPFLSRQSSTSSRLSGINLPPSLAIPNPSTSTSWPTMSELQSSDDLMSPNHLLLGSSTSSSSLPFYANGGSDPIDEFQLQDQLSFLNDGSPTSTALAHKNSPDFFYPPHSDLSSSPTAADPTLFPSYAWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGSAAMVGSPSKIEMMEQCHELLRSKSAQQQRLAAASQLMATSTFPYSPKCMNFLLQQQQQNDSQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMLYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTQSPNIFNQNLVLPSFHISSEAPIESGSISAPASTASISSSQQPVNISVSKEMVVNGVNAYDEGNGKESSNHEDRVLQEWYKICVSCRISKRAQE 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00550 630 SMART rrm1_1 365 435 IPR000504 GO:0003723
Pste1g00550 630 MobiDBLite consensus disorder prediction 61 119 - -
Pste1g00550 630 SUPERFAMILY CCCH zinc finger 233 255 IPR036855 GO:0046872
Pste1g00550 630 ProSiteProfiles Zinc finger C3H1-type profile. 230 257 IPR000571 GO:0046872
Pste1g00550 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 440 IPR000504 GO:0003723
Pste1g00550 630 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 371 442 - -
Pste1g00550 630 Gene3D - 224 323 - -
Pste1g00550 630 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 606 - -
Pste1g00550 630 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 255 IPR000571 GO:0046872
Pste1g00550 630 SMART c3hfinal6 232 256 IPR000571 GO:0046872
Pste1g00550 630 Gene3D - 362 460 IPR012677 -
Pste1g00550 630 MobiDBLite consensus disorder prediction 79 119 - -
Pste1g00550 630 MobiDBLite consensus disorder prediction 441 464 - -
Pste1g00550 630 SUPERFAMILY RNA-binding domain, RBD 375 454 IPR035979 GO:0003676
Pste1g00550 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 421 IPR000504 GO:0003723
Pste1g00550 630 CDD RRM_AtC3H46_like 366 435 IPR034365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00550 Pste-Chr1 1772541 1775942 Proximal