Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00544 AAGAAAAAGAAATGAAGTTGTCAGGTGACAGAAGCAGCTTTATCTTCTTTTTCTGACCTCGCTTCCATCCCCTTTCATAGTAATGATTCCGCAGCTTACTCCTTTCTCTTTCTCTTTTCTCTCTGAAAACAAAACTTGAATACATACCCTGCCCTTCTTCCCCTCCTTCGAAGCTGCAGCCAGCACACAAATCAATCTGCCATTAATGCCCTCGCTTCTTCCTCTTTCTGTGTGTATGTAAAATCTTTGTTTTTAGCAGAGGTGGTGCAGAAAGTTGTGTCTCAGATCCCTATATACACCGAAAACGATACAACTCTGCACAGTGCTTCTCTCTCTCTCAGAATCATCATCATAAATCGAATAGCTAGGGTGGTCCTAAACCTCAACCTGTGCTCGTCCTATATTATTGTGCTCTCTCTCTCTATCTAGTGGGGAAATGCAAGAACCAAGCCTGGGAATGATGGGTGAGGTGTCCGGCGATCACCAGCGACAACTGAAGGCGGAGATAGCGAGCCATCCGCTATACGACCAACTTCTCGCTGCACACGTGGCGTGCCTCCGTGTCGCCACTCCCATCGATCAGCTTCCTCTCATCGACGCTCAGTTATCTCAGTCGCACCATCTTCTGCGTTCTTATGTCTCACACCACACCCACTCTCTCTCCTCCAATGTCAATGATCGCCAAGAACTTGACAACTTTCTGGCACAATACTTGATAGTTCTGTGTACTTTCAAAGACCAGCTTCAGCAACATGTCAGAGTCCACGCCGTCGAGGCTGTCATGGCCTGCCGTGATATCGAAAATACCTTACAGGCCCTCACAGGAGTGAGTTTGGGAGAAGGAACTGGTGCAACAATGTCAGATGATGAAGAAGATTTGCAGATGGATTTTTCTTTAGATCAATCGAGCACCGAAGGGCATGACATGATGGGATTTGGTCCGTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTTAAACAGGGTTTCAAATCAAGAATTGAAGATGTCAGGGAAGAAATATTAAGGAAACGTAGAGCTGGAAAATTGCCAGGTGACACAACTTCGGTGTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATTGGTTACCTCTTTGAAGTCCAAGCGCAAGAGGTAGACATATTTTGTCCCTAACTATGTGGAACAGCTAGCAATCAACACAACTATATTATATAAGGATTTACTTTATATATCCTTATTGCGGGGATAGAGTATAGTCCCACTAAGGATTCCAGTCAGATGCAGAAGGTAGATGGGTTACTACATGTAATGTAAGTAGCTGAAAAAAAAGGCTGGCTGTAAATTTGTTGAATTTAACGCACGCAAACTTTTCTTTTAGGTGTGGTTAAGTTGCCTCTCTTTTAACTGTCTTTGTAAATTGTTTGCTACTTTTCTGACCAGCAGAAGAATTATTACTATTACTGCACAGATGCTTGAAATATTTGC 1617 0.436 MQEPSLGMMGEVSGDHQRQLKAEIASHPLYDQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYVSHHTHSLSSNVNDRQELDNFLAQYLIVLCTFKDQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEEDLQMDFSLDQSSTEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQLVTSLKSKRKR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00544 283 FunFam homeobox protein knotted-1-like 3 isoform X1 207 268 - -
Pste1g00544 283 SUPERFAMILY Homeodomain-like 208 273 IPR009057 -
Pste1g00544 283 SMART KNOX1_2 18 62 IPR005540 GO:0003677|GO:0005634
Pste1g00544 283 Pfam KNOX2 domain 79 129 IPR005541 GO:0003677|GO:0005634
Pste1g00544 283 Pfam KNOX1 domain 20 61 IPR005540 GO:0003677|GO:0005634
Pste1g00544 283 Gene3D - 205 276 - -
Pste1g00544 283 SMART KNOX2_2 75 130 IPR005541 GO:0003677|GO:0005634
Pste1g00544 283 ProSiteProfiles ELK domain profile. 186 206 IPR005539 GO:0003677
Pste1g00544 283 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 269 - -
Pste1g00544 283 ProSiteProfiles 'Homeobox' domain profile. 206 269 IPR001356 GO:0003677
Pste1g00544 283 SMART HOX_1 208 273 IPR001356 GO:0003677
Pste1g00544 283 Pfam Homeobox KN domain 226 265 IPR008422 GO:0003677|GO:0006355
Pste1g00544 283 CDD homeodomain 209 270 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00544 Pste-Chr1 1750001 1755887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00544 1 282 Homeobox Transcription Factor Family AT1G62990 77.211 4.25e-169 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste1g00544 KNOX2 2.2e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00544 1 1750001 1755887 Pste1g00544 1 1750001 1755887 ECH
Pste6g01695 6 7536424 7537501 Pste1g00544 1 1750001 1755887 PCT