Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00520 AGAAAAGGTTTGGCGGGGAAGGGTGAAAATGGAGGAAGAGGAAGATGAAGAATTTGTTTGGTGTTCTTCTGATTCGGGCGGCGACGACGACGATGACGATGACGATGACGAGGAGGAGGAACGAAAATCACAGAATGTGGATGCCTTGGTGAGCGGCAAACCTTATTGTGAAGCGACAATCTGTCGCAAGGAGCGGCTGTGTGCAGAAACCCTTCAAACCTCCGTGTCATGGTTCCGGTTACAACCAAGATCTCACACTCGTAGGCTTTCCGTTCGTAAAAGGTTTGTTTCCTGGGGTTCTTCCTCTCCTGTTCCTGTTCCTGTTCCTAGACACGCTTTTGAAGACCTCAAATTCAATGTTGCTGTTGCTGATGCCGATACCGATACCGAGGAGCTGAAACCGTCTTTGCCCCCGTTGACCCCCTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGGTTCAGTTCATGTTTGATTGTGTCTCAGGACTGTGTACAACCCCAAATGTAAATGGATGCATTTTGGCAGATGACATGGGTCCATCACATTTACTATATACTCTCCTTTTTCAAGGCTTTGATAGCAAACCTATGGTTCGAAAGGCCATCATTGTGACCCCTACCAGCCTTGTCAGCAACTGGGAAGCTGAAATAAAAAAGTGGGTTGGAGAAAGAGTTCGTCTTCTTGCCCTATGTGAAAGCACAAGAGAAGATGTTATTACTGGGATTCACAACTTTACGAGTCCCCAAAGCAACTTACAGGTGCTCATTCTTTCATATGAGACATTCCAGAAATGCATTCATCAAAGTTTAGCACTAGTGACTCATGTGATCTTCTCATATGTGATGAGGGCTCACAGACTGAAAAATGATCAGACAATAACAAACCGGCACCAATTATTTGTGGAAAGAGAACCTGCTGCCACTGCAGAAGAGAAGAAGCTAGGTGATGAACGCTCTGTTGAATTAAGTGTTAATGTTAATCAGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCCAAAATCTTATCTATGACACCCATAAGAAGTGGAGTCAAGGAACTTCAGGTTTTGAGGACTGTATCCCGATTTTTCCCTCCTGAAATGTTATCTGGAAGGGTATACATTGTAGGTCTGGCTCATGGACCGGAGGGCATGGAGCATGGGTTGAGCTATCTGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCGGGAGAACCAATGACCGCATTGTCCTTGTCTCAAACTACACTCGGTACCCTCACTTGAGGCTTGATGGCTCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTTAATGATCCATCCAAGCAAGGCTGGTGGTTGTGGTTGTGGACTCAATTTGATTGGGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCAGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCCGGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGGCTGCAAAGGTCATTCAGCAGGAGCAACCCTAGTAGCCTTGTGGCACAGGTCAGAGATTCATGAAAAGATGCGATGCAATCGGTGTCAAACATTCAATGGCTCTCCAAACACTGATGCGCAATCAACAATAAGAGATAGTGAGTCCGATGAAGAAACCTCTGATATAGGTAGGGAGCCCATTGGAAGAGGATTTAGGATGCTGGGGCCATCATTTTTTTTCCCAACTTCTGTACCAGATGCTATCCTTCAGGCTTCAGCAGGTGATGAGGTTACTTTTGTCTTCACAAACCAAGTTAACGGACGACTGGTGCCACTGACTGAGTCCATCATCAGCCCAAGCTACTGCAAAGGGAACCAGATAAGGAAATGCTCAAGCCAAAGCAGAATGGTAAACAAAAAACCTCTATTTATTCTTTACATAACAGACTACCACTGCAGTCTGTTGCTAGTATGTCGTCATCCACTCCCATTGCTTGGACTAAAGAAACGACCGAGTATTCTGTTTGTAAGTAAAGTATTGCCACAGAAAAGATCATGTACTAATATCAATGATGATAATTTTGAG 2215 0.4379 MEEEEDEEFVWCSSDSGGDDDDDDDDDEEEERKSQNVDALVSGKPYCEATICRKERLCAETLQTSVSWFRLQPRSHTRRLSVRKRFVSWGSSSPVPVPVPRHAFEDLKFNVAVADADTDTEELKPSLPPLTPCLFVTFVHIREKGVQFMFDCVSGLCTTPNVNGCILADDMGPSHLLYTLLFQGFDSKPMVRKAIIVTPTSLVSNWEAEIKKWVGERVRLLALCESTREDVITGIHNFTSPQSNLQVLILSYETFQKCIHQSLALVTHVIFSYVMRAHRLKNDQTITNRHQLFVEREPAATAEEKKLGDERSVELSVNVNQFILRRTNALLSNHLPPPKIVEVVCCKLTPLQSDLYKHFIQSKILSMTPIRSGVKELQVLRTVSRFFPPEMLSGRVYIVGLAHGPEGMEHGLSYLGKCMSWQDYLLIYVGRTNDRIVLVSNYTRYPHLRLDGSTSISKRQKLVNCFNDPSKQGWWLWLWTQFDWGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGNNRRKGLPASDVKRRGCKGHSAGATLVALWHRSEIHEKMRCNRCQTFNGSPNTDAQSTIRDSESDEETSDIGREPIGRGFRMLGPSFFFPTSVPDAILQASAGDEVTFVFTNQVNGRLVPLTESIISPSYCKGNQIRKCSSQSRMVNKKPLFILYITDYHCSLLLVCRHPLPLLGLKKRPSILFVSKVLPQKRSCTNINDDNFE 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00520 729 MobiDBLite consensus disorder prediction 584 599 - -
Pste1g00520 729 MobiDBLite consensus disorder prediction 1 37 - -
Pste1g00520 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 287 IPR027417 -
Pste1g00520 729 Gene3D - 118 293 IPR038718 -
Pste1g00520 729 Gene3D - 326 525 IPR027417 -
Pste1g00520 729 Gene3D - 349 409 - -
Pste1g00520 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 525 IPR027417 -
Pste1g00520 729 CDD SF2_C_SNF 423 522 - -
Pste1g00520 729 MobiDBLite consensus disorder prediction 1 32 - -
Pste1g00520 729 Pfam SNF2-related domain 157 288 IPR000330 GO:0005524|GO:0140658
Pste1g00520 729 MobiDBLite consensus disorder prediction 575 600 - -
Pste1g00520 729 PANTHER SNF2/RAD54 FAMILY MEMBER 73 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00520 Pste-Chr1 1672541 1682940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00520 448 543 RAD5 or RAD16-like Gene Family AT5G05130 30.973 3.93e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste1g00520 SNF2_N 1e-08 CL0023