Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00489 GTTGGGGAGTCCCGAGGTGAGTGATAGTAATGGTGGACAGAGAAAGACTCTTAATCTAAACGAGATCACAATATCTCTCTCTCTCTCTCTCCCTCTTCAATGCCAATGTTCTTCCTTTCCTTTCCTATAGAGATTTGAGACTGGGGACCAATTTCCATTTCCAAAGCAGAGGATGGATCCAGCCGCCATAATGAACGGCGCGTCGTTTCACCTCTCAGAGATCTGGCAGTTCCCGCCTCCCGCCGCAGCGGATGCCGTCGCCCTCAGGAGGCCTCAGTTCGGGGACTTCGCCCCGCCCAGCATTGGCCACAAGAGACGCGAGCCCCAGGAGGAATCGCCTAAGGGCGTCTCCACCACCAATGGCGTGAACGACGCTGGTGATGGGAAACGGGTTAAGACGAGTAAGAGTGAGAATGGAAAAGGCGAAGGAGAAAGCAGTTCAGGAAAGCCTGCGGAGCAAAGTGGTAAGCCACCTTCGGAGCCTCCCAAGCAAGACTACATTCATGTTCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAAAGAGCAAGACGGGAAAAAATTAGTGAGAGGATGAAAATTCTTCAGGATTTAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTCGATGAGATAATTAATTATATCCAGTCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCTGTAAATTCTAGAGTGCCCCCCGGAATTGAAATGTTTCCTCCTAAAGATTTTGATCAACAAACATTTGATACAACTGGCATGCCGTTCACTTCTCAAGCTACAAGAGAGTATAGCCGAGGTTCATCACCGGACTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAGGATCAAGGTAGTCTTTGAAATCCCATCACCTGAAAATAAATGCATATAGGATCCCTAGTTTCTCCATCAGAGCTCCCATAAATCATATACTCAAGGTGGTGGTGTTAAGTCCAAATGTCCAATGGACACAACATTCCCATTTTCTACAAGGCATGGAGCTGTCATTTGTTTCCACATGATCGCTTCAGTTAGTACTTAAGCAAGTCCATTTGTTAGTGTGTTGGAAAATGAATTCATTTATCCAATATGTAGTTTAGCGGACTATATAGGCTTTCTATGCTGATACACTTCATAACCTTTAATGTGATTATTATTCTTGTAAAAGAATGCTGCTTGTCCTGAATACATAAAGGCTTACATATTGTGTAATAGTGTCAACATTGTTGTTTGCCTGTGAAGTTATGTTGAATAAATTAAGCCC 1302 0.4501 MDPAAIMNGASFHLSEIWQFPPPAAADAVALRRPQFGDFAPPSIGHKRREPQEESPKGVSTTNGVNDAGDGKRVKTSKSENGKGEGESSSGKPAEQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVPPGIEMFPPKDFDQQTFDTTGMPFTSQATREYSRGSSPDWLHMQVGSGFEGSR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00489 239 Pfam Helix-loop-helix DNA-binding domain 122 169 IPR011598 GO:0046983
Pste1g00489 239 MobiDBLite consensus disorder prediction 29 107 - -
Pste1g00489 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 186 IPR036638 GO:0046983
Pste1g00489 239 Gene3D - 115 187 IPR036638 GO:0046983
Pste1g00489 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 168 IPR011598 GO:0046983
Pste1g00489 239 SMART finulus 124 174 IPR011598 GO:0046983
Pste1g00489 239 Coils Coil 165 185 - -
Pste1g00489 239 FunFam Basic helix-loop-helix transcription factor 115 187 - -
Pste1g00489 239 CDD bHLH_AtBPE_like 108 191 - -
Pste1g00489 239 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 60 211 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00489 Pste-Chr1 1585243 1588520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00489 1 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 54.651 4.78e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g00489 HLH 1.7e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00489 1 1585243 1588520 Pste1g00489 1 1585243 1588520 ECH
Pste1g00489 1 1585243 1588520 Pste7g00814 7 7559995 7563239 PCT