Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00421 GTAGTTTTTGGCACTGGTTTACGCTGTTTCGCGGCGTTGTTAACTTCCCTTCACTCAACCAACTTCCATCTCCAACTATGGGTCGGAAACACGACGCCGTTTTGCTCAGCGAACCAGTCGCCGACGATGCCCCCTACAGCCCCGACCTCGATTCCGAGAAGAAGAAGAAAAAGAAGAAGAAGAACAAGGACAAACATCAAAGCGAGAGCAGCCCCAAACGTAAGATCGACGAACTCGACCATCAAAACGGCACCGAATCGAAGAAGAAGAGAAAGAAGAAGCACTCCAAAGATAATGCTGAGGAAACCAAGGCAGACAACAACAACGAAAACGGTGCTCATCGCGACGAAACGGTGACGGACGGGTCCGTCGTAGTCACCGGTGAGAATGCCGGAGACGCTAAATACGCGGCGGTTAAGAGCTTCACGGATTCGGGGTTGCCGGAGAACGTGCTGGAGTGCTGCAAGGGTTTCGAGAAGCCTTCACCGATTCAGTCACGAGCGTGGCCTTTCTTATTGGACGGTCGTGATTTGATTGGAATCGCTGCTACTGGTTCAGGGAAGACGTTGGCGTTCGGCATACCTGCGATTATGCATGTTTTGGGAAAGCGGAAGGGTAGAAGTTCCAAGGGACGGAATCCCCTTTGCCTTGTGCTATCTCCTACTAGAGAGCTAGCTCAACAAATATCAGATGTCATTTGTGATGCTGGTAGCTCCTGTGGTGTTGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGACCGCAAATTTCCTCACTTAAATCTGGAATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGACCTGATTGAAATGGGTGTCTGTCGCCTAAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGAATGCTTGACATGGGTTTTGAACAAGTAGTCCGCTCCATACTGGGTCAGACATGTTCTGCTCGACAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATCACTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAAGTTGTTGTAGGTTCAGAAGACTTAGCTGCCAATCATGATGTAATGCAGATAGTTGAGGTCTTGGATGACCGAACTCGTGATAACCGCCTGCTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTCTCAATACATGGAGACAAAGCCCAACATGATCGCACAAAGGCACTCTCATTGTTCAAGAAGGGAAGCTGTCCTTTGATGATTCTTCTGCAACTCCCTCTCAATGTTCCAGTTTTAATTGCTACTGATGTGGCCGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAATTATAGTTTTCCTCTGACTACAGAGGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCACATACATTTTTCACACAGCAAAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGGGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCACACTTCAAGGAAATCCCTGTCGATGCTCCAAAGTCTCAAAAGAAAACATTCGACGACTCTGATGAAGACTAGATGCTGGTAACTCGTGTTAATTTTTTGGCTGAAGGAACATATAAATTCGGTCATTTCTTACTCTTTTTGGTCGAGTTATTTATTAATTTAAAAGACGTTATAAAGAAAGGTTAGTTATGAATATAGATTAGTGAGTCTTTTCCTGTTGTAGCATGCACTTATCTGGGCGTGCTTGTAAGCTTTGTTCTTTTCTTCACTTTGAGATGATAATTTTGAATTTGCAGTTTGCACATTTTAGGTGTCAAGGGTTGTCTTTTAATTTTACTCAAACGATACGAAACACTTTACATTGAGAAATTTGGTCACCAGAGACCTGATTTCTCACTTTTTTTTACATTTGAGAAATCGGTCCTCTTCTTCTAAAGTCCAAACAAGAATCCTCAATGTGGTTTTTGTAGTTGTTCTCTGTAATTAATAAAACCCATTTTAATTATTTTTAATAGTGTTAGTTTAGTTTAAAAAATGC 2178 0.4334 MGRKHDAVLLSEPVADDAPYSPDLDSEKKKKKKKKNKDKHQSESSPKRKIDELDHQNGTESKKKRKKKHSKDNAEETKADNNNENGAHRDETVTDGSVVVTGENAGDAKYAAVKSFTDSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVLGKRKGRSSKGRNPLCLVLSPTRELAQQISDVICDAGSSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCRLKEVSFVVLDEADRMLDMGFEQVVRSILGQTCSARQMVMFSATWPLPVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRTRDNRLLALLEKYHKSQRNRVLVFVLYKWETKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMILLQLPLNVPVLIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDDSDED 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00421 544 MobiDBLite consensus disorder prediction 70 91 - -
Pste1g00421 544 FunFam ATP-dependent RNA helicase RhlB 323 512 - -
Pste1g00421 544 CDD DEADc 130 321 - -
Pste1g00421 544 Gene3D - 324 511 IPR027417 -
Pste1g00421 544 Gene3D - 60 323 IPR027417 -
Pste1g00421 544 SMART helicmild6 376 469 IPR001650 -
Pste1g00421 544 SMART ultradead3 131 337 IPR014001 -
Pste1g00421 544 MobiDBLite consensus disorder prediction 39 60 - -
Pste1g00421 544 MobiDBLite consensus disorder prediction 1 97 - -
Pste1g00421 544 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 320 IPR014001 -
Pste1g00421 544 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 508 IPR001650 -
Pste1g00421 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 482 IPR027417 -
Pste1g00421 544 CDD SF2_C_DEAD 334 478 - -
Pste1g00421 544 Pfam Helicase conserved C-terminal domain 348 469 IPR001650 -
Pste1g00421 544 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 62 504 - -
Pste1g00421 544 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 114 140 IPR014014 GO:0003724
Pste1g00421 544 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 266 274 IPR000629 -
Pste1g00421 544 Pfam DEAD/DEAH box helicase 137 304 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00421 Pste-Chr1 1411610 1417281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00421 113 477 Eukaryotic Initiation Factors Gene Family AT3G19760 33.787 5.29e-56 191