Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00416 ATGACCGGCCACGAGGCAGAAGCTACGGCGTTCCAGGCTCTGGCGGATCGGTGCCGGAGCCTCGAGGAGAACCAGGCCAAGCTGAGAGAAGAGTTCCATGAACTGCTGCAGGAGAAGAAAAAGCTCACAGTCAGGGACGATAGCCACGCCATTGCTGATTCAACAACCGTCGATTTTCTTTCCGGTTTCTTCTTCTCCGGAACTCCCTACACCTCCGTCTTGAAATGCATGGGCCACGCCGTTCACGTCTTCAGAGTTCCCTCCGCCGAGATCATATACTGGAATCACTCGGCGGAAACTCTGTATGGATGGAAGGACTACGAAATCATTGGCCAAAGAGTAGCTAATGTCCTAATTGCAGAAGAAAATCATGCATCTCTACAAAAAATTCTGGAAAAGTTGGTCACAGGAGTACCTTGGTCTGGGCAGTTTCCTTTTAAGAAAAGGTCTGGTGAAGTATTTATGGCAATGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACCGTTTCAAGTGATGCAGCTATATTGAACTCTAGAAATTCAGAAAATAAAAAAATTTTCCAATCTGGTAACAATGGCCAAGCTGGAGAGCAGAGGTTAAACTTCAAAAGAATTCAGTGGCCTCCACGACCAATGATTGCACCCATGCCACAGATTGCTTCATGTGTTTCCAATCTGGCGTCAAAGTTTCTCCCAGTGCTGAATACTCCTGATAACACAGATTCCAGGAACACTTTAACAGATGCAGATGAGGAAAAACTGGAGAAGCGTGGTATATATGAAACAAAACCTCGTCCCAGAGATATCCATAATGAAAACACAACTGTCCTAGAGGCCTCTGAGAAGAATGAATCTACTACAGAATTTGGTCAACCTTCTAAAATTGCTGCCAGAGTCCCTGCCAAACTTCAAATTGGGGCACGTGCAAAATGTGGGAAGGATAGTGGAAATATAAAAAATAATTGTACAGCCGATAATTCAGGAAGAAATACAGTGAATAATGCAAATGATACATGTGGAGGCTTTGTGGCATTAAATAGATATCAGGATGTTGCCAATGGAGCAGATAAAGAAGAAAATCTTTATAAAGGCAATTCGTTATTTGCAATGAAGAGAACAGATACAAAAGTTTGTGCATGTGGAGCTTCCAATGTTCTTAAAGATAGTACTAGTAAACCTTTCTCAGGGGAATGGTGTGAATGTTTTGGTTCAACCATTCCCCAAGACCCATTGTTAAGATTACGCTGTCAAATTGATCAGAAGAAATTGGAGCCTGAGGCTACAAATATGGTGACTGGAGATGAAGTGCAAAAGCAGCCGGAAGGGTTGCAATTGCCAAGTTCGAGGGATAGCATAGGCAGCCATGAAAGTTCATCTAGCAAAGAGGATAATGAGTCAAACTCTGTTTTGGAGTGTTCTTATGCTGTTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTTCTTTGGGAATGAATACACAGAGGAAACTTTACAAGCCTACAGGAAAGAGATTGATATAATGAAGAGATTGAGACACCCCAATATATTGCTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATTGTGACAGAGTTATTACCTAGGGAACCATCTTTGATTGATTTTGTTTTGCATGGTAGGGGAAGCCTTTTCAAAAATCTGCACAGGAACAATCAGACATTAGACATCAGAAGGCGACTAAGGATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCACAGAGACCTGAAGTCTTCCAACCTGCTTGTAGATAGAAATTGGACTGTAAAGGTTGGAGACTTTGGCTTGTCTAGGTTGAAGGATGCAACTTTATTGACTACAAAATCTGGAAGAGGCACTCCTCAATGGATGGCCCCTGAAGTTCTCAGAAATGAACCTTCAAATGAAAAGTCTGATGTGTACAGTTTTGGTGTCATCCTCTGGGAATTAATGACTCAATCTATTCCATGGAAAAAATTGAATTCCTTACAGGTTGTTGGAGTTGTAGGCTTTATGGATAGACGACTGGACCTTCCGGAGGGGCTTGATCCTCATGTTGCGTCTGTCATTGATGACTGCTGGCGAAGTGATCCAGAGCAACGCCCGTCATTTGAAGAGCTGATACAGAGAATGTTGTTCCTTGTCAACAGAGTAACAGCGGTGTCAATTAGGAGAGATTCAGAATCCTAAACTTGTTAAATGGTTTAGCTTTTGCCTTCTGGGAATATGTTGTTAAAACAGATTATGAGAAGTGCAAGCCAACAAATTGAGTGCTAAACTGCAAAACCTTCTTTCGGAAAGAAGGAAAACACAAGGGAGAGAAATGGCAGAGGTGCTGGAGGTGAAATTGATCCATGACGTGCTCCTTTTGTGCGGAATGGCTACTGAATAGTGAATAGCAGGCAAACAAGTTTTTCAAATTTTGAGCGAGCATTCGAATGGAATCTTTCTTCGTCTCTGGATTTTTGCTTCGCGTCCGGTTCTTCTCCGGTCTCCGGTCACTAGAGAGGTCGGAGAAAGAAAATTAAAGGTCCTTGTAAGGTTCGTGAGCCTCACAAAGTTTTTGTCTCTCTCTTAGTAGTCATATCTCACTTAATGACAAAAAAATCAATGCTTTTAAAATGATGGAACGGATGTACTGCTTCGTTTGAACTTGTTGAATTGAG 2732 0.4213 MTGHEAEATAFQALADRCRSLEENQAKLREEFHELLQEKKKLTVRDDSHAIADSTTVDFLSGFFFSGTPYTSVLKCMGHAVHVFRVPSAEIIYWNHSAETLYGWKDYEIIGQRVANVLIAEENHASLQKILEKLVTGVPWSGQFPFKKRSGEVFMAMVTKTPLYEDGELVGVITVSSDAAILNSRNSENKKIFQSGNNGQAGEQRLNFKRIQWPPRPMIAPMPQIASCVSNLASKFLPVLNTPDNTDSRNTLTDADEEKLEKRGIYETKPRPRDIHNENTTVLEASEKNESTTEFGQPSKIAARVPAKLQIGARAKCGKDSGNIKNNCTADNSGRNTVNNANDTCGGFVALNRYQDVANGADKEENLYKGNSLFAMKRTDTKVCACGASNVLKDSTSKPFSGEWCECFGSTIPQDPLLRLRCQIDQKKLEPEATNMVTGDEVQKQPEGLQLPSSRDSIGSHESSSSKEDNESNSVLECSYAVVYHGIWNGSDVAVKVFFGNEYTEETLQAYRKEIDIMKRLRHPNILLFMGAVYSQERLAIVTELLPREPSLIDFVLHGRGSLFKNLHRNNQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDRNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMAPEVLRNEPSNEKSDVYSFGVILWELMTQSIPWKKLNSLQVVGVVGFMDRRLDLPEGLDPHVASVIDDCWRSDPEQRPSFEELIQRMLFLVNRVTAVSIRRDSES 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00416 751 MobiDBLite consensus disorder prediction 270 299 - -
Pste1g00416 751 FunFam PAS domain-containing protein tyrosine kinase family protein 559 748 - -
Pste1g00416 751 Coils Coil 11 45 - -
Pste1g00416 751 Pfam Protein tyrosine and serine/threonine kinase 477 732 IPR001245 GO:0004672|GO:0006468
Pste1g00416 751 FunFam serine/threonine-protein kinase STY46-like 467 547 - -
Pste1g00416 751 PRINTS Tyrosine kinase catalytic domain signature 641 651 IPR001245 GO:0004672|GO:0006468
Pste1g00416 751 PRINTS Tyrosine kinase catalytic domain signature 660 682 IPR001245 GO:0004672|GO:0006468
Pste1g00416 751 PRINTS Tyrosine kinase catalytic domain signature 704 726 IPR001245 GO:0004672|GO:0006468
Pste1g00416 751 PRINTS Tyrosine kinase catalytic domain signature 594 612 IPR001245 GO:0004672|GO:0006468
Pste1g00416 751 SUPERFAMILY PYP-like sensor domain (PAS domain) 88 178 IPR035965 -
Pste1g00416 751 ProSiteProfiles Protein kinase domain profile. 469 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g00416 751 Pfam PAS domain 87 178 IPR000014 -
Pste1g00416 751 MobiDBLite consensus disorder prediction 284 298 - -
Pste1g00416 751 NCBIfam PAS domain S-box protein 89 178 IPR000014 -
Pste1g00416 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Pste1g00416 751 SMART serkin_6 473 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g00416 751 MobiDBLite consensus disorder prediction 433 471 - -
Pste1g00416 751 Gene3D Phosphorylase Kinase; domain 1 467 546 - -
Pste1g00416 751 Gene3D Transferase(Phosphotransferase) domain 1 560 743 - -
Pste1g00416 751 SUPERFAMILY Protein kinase-like (PK-like) 479 740 IPR011009 -
Pste1g00416 751 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 258 734 - -
Pste1g00416 751 CDD STKc_MAP3K-like 479 733 - -
Pste1g00416 751 ProSiteProfiles PAS repeat profile. 88 138 IPR000014 -
Pste1g00416 751 CDD PAS 90 178 IPR000014 -
Pste1g00416 751 Gene3D PAS domain 86 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00416 Pste-Chr1 1396617 1404210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00416 1 739 MAP Kinase Kinase Kinase AT4G23050 41.635 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Pste1g00416 PK_Tyr_Ser-Thr 1.6e-59 CL0016