Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00406 TGCAACTTCAAAACCCAACCCATTAGCTTCATCTCATTCTTTATTAGACCAACTTAAATATGGGTAAGGCATCTAAATGGTTTCGCGGCCTTCTCGGTCTCAAAAGACCAGACTCTCCCTCCCCCACCGTCCCAAAACCGCCCAAAGAAAAACGCCGCTGGAGCTTCGTCAAGTCTTACAGAGAAAAGGACCACCCCGACATGGCAGCCGCCACCGTCGCTCGCCTCGCTAGCAGTGCCCGCTGCGCTGCCACCCCCGCCGCCCCAGCCATCACTCCACAAGAATGGGCTGCCATTAAGATTCAAGCCGCATTTCGAGGCTCTTTGGCAAGGAAAGCCCTTCGAGCATTAAAAGGATTGGTGAAACTACAGGCGTTGGTGAGAGGTCACCTTGAGCGAAAGCGCACAGCAGAGTGGCTGCAAAAAGTGCAAGCACTCTTACGTGTACAGGCCCAAATCCGTTCTGGGCGAGCCCAAAATTTGAACTCCCCCTATTGGAGTGCAAAATCACCCGCTGCCCACCTCCATGGTCCAACAACACCAGACAAATTTGAAAGCCCCATTAGATCCGAGAGCTTGAAATATGAGCAGTCATCATCAGTACTCAAGAGAAACAGCTCCAAATCACGTATACTGATCAATGGAAATCAAGAAAAATGTGGTAATAGATCAGATGGTCGCAAGGATGAAGAATCATGGAATCGACGAAAATCATGGACAAGAGCTGGTAGCATGGATGAAGAAAGAAGCACGAGGATTCTAGAAACTGAACCTGAAAAACCACACAAGACTTCAAAACGTGGAAACGTCTTTTACTCCCCTACCAAAGCTTTGGTTTCGGATCAATATTACAGTCAATGTTTGAGCAACAACACGAAGGACTCAGTATCTTATCAATCGGGTCAAAGTGTATGTTCTTCTGAAATTCAGTCTTACAGCCCTCTAAAAATGAATGAGCTTGAGGAGTGTGCTGCTGACAATAATAGCCCTCAAGCCAAAAAAAGCCCTTTTACTCCTACCAGGAGTGATGGGTCAAGAAGCCACCTAAGTGGTTATTCTGAACCTGACTATCCAAGTTACATGGCTTACACTGAGTCTTCAAAAGCAAAGGTAAGGTCTCTGAGTGCTCCAAGGCAGAGGCCCCAGTATGAGAGGTCTAGTTCATCTAACAGGTACACCCTTCATGGATTATTTGGTGACCCAAAATTGCCCGCGCAAAGGATATCTGCATTACAAGCAAACTTCACCTCCAAAGCTTACCCTGGTTCTGGTCGTTTGGACAACCTTGGCTTGCCTCTCGGGTATAAATATTAA 1313 0.4714 MGKASKWFRGLLGLKRPDSPSPTVPKPPKEKRRWSFVKSYREKDHPDMAAATVARLASSARCAATPAAPAITPQEWAAIKIQAAFRGSLARKALRALKGLVKLQALVRGHLERKRTAEWLQKVQALLRVQAQIRSGRAQNLNSPYWSAKSPAAHLHGPTTPDKFESPIRSESLKYEQSSSVLKRNSSKSRILINGNQEKCGNRSDGRKDEESWNRRKSWTRAGSMDEERSTRILETEPEKPHKTSKRGNVFYSPTKALVSDQYYSQCLSNNTKDSVSYQSGQSVCSSEIQSYSPLKMNELEECAADNNSPQAKKSPFTPTRSDGSRSHLSGYSEPDYPSYMAYTESSKAKVRSLSAPRQRPQYERSSSSNRYTLHGLFGDPKLPAQRISALQANFTSKAYPGSGRLDNLGLPLGYKY 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00406 417 PANTHER IQ-DOMAIN 5-RELATED 1 370 - -
Pste1g00406 417 SMART iq_5 73 95 IPR000048 GO:0005515
Pste1g00406 417 SMART iq_5 96 117 IPR000048 GO:0005515
Pste1g00406 417 MobiDBLite consensus disorder prediction 306 329 - -
Pste1g00406 417 MobiDBLite consensus disorder prediction 171 200 - -
Pste1g00406 417 MobiDBLite consensus disorder prediction 201 246 - -
Pste1g00406 417 MobiDBLite consensus disorder prediction 306 336 - -
Pste1g00406 417 ProSiteProfiles IQ motif profile. 74 102 IPR000048 GO:0005515
Pste1g00406 417 MobiDBLite consensus disorder prediction 149 249 - -
Pste1g00406 417 MobiDBLite consensus disorder prediction 349 373 - -
Pste1g00406 417 Gene3D - 30 99 - -
Pste1g00406 417 MobiDBLite consensus disorder prediction 1 33 - -
Pste1g00406 417 Pfam Protein of unknown function (DUF4005) 311 367 IPR025064 -
Pste1g00406 417 ProSiteProfiles IQ motif profile. 98 125 IPR000048 GO:0005515
Pste1g00406 417 Pfam IQ calmodulin-binding motif 101 115 IPR000048 GO:0005515
Pste1g00406 417 Pfam IQ calmodulin-binding motif 76 95 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00406 Pste-Chr1 1373188 1376459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00406 1 44 IQD Protein Family AT4G23060 54.902 4.44e-08 53.1