Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00400 CACTCCCACCTAGGAAAAAAAAATTGTCGTCATCATTCCCATATTTATTTATTTACCAATTCTCAATTTCAATTTTCAAAGCCACTTTTTCAGATAGGTAAGGTATCTCTTCTTTTCCATTCAAATCAAAACCACAATCATTCACCTCTATCACTGCTAAACAGATTTCATTTGTTCCCAACAACATGTTCTGAACTGAGTCAATACTCCGAATCGTCTTTTCAATTTCAACCACCCCAAACATGGCCTCCACAAGGTCCCCGAACCGTTCCTCCGAGGACATCGTCGATTCCACGCCGCTGCTATCCAATTCCGGCGGCTCCTCCGACGAGCTCACCTCCGGTCGTCGATTCGCGCGGCGGCAGAGGCTCCGGCAGGCGGCACGGTTCCTCCGGCAGGCTAGCGGGCGGCGGATGATGCGGGAGCCGTCAATGTTGGTCCGGGAAGCGGCGGCGGAGCAATTGGAGGAGCGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTTGTTCTGGACATGGTTTGGAACTTCGCATTTGTGGTTGTGGCGGGGACGGTGTTGGTTTTGAGCACAAATGAAGCGCCAGGCATGCCTCTGAGGTTGTGGATTGTAGGTTACGCTATGCAATGCGTGCTTCACATGGTTTGCGTTTGCGCGGAGTATCGGAGGCGGAGGAGGCAGCAACGCGCCACCGCCTCGTCGTTGAACTCGGTTTCAGTACAAGACAGAGTTGGGAGCAGCAGCGGGAATTTGAGTGTCTCTTCGAGGGACGATTCTGTTTCGGGCTCTGCGCAGTATGTGTCACTGGGGCAACTCGATGAAGAGAGTACTAGTGTCGCAAAACATTTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCATTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATCGCTGTTTGCTGTTGCCTTCCATGTATCATTGCACTTCTTTATGCAGTTGCAGACCAGGAAGGGGCATCAAAGGAAGACATTGAACAGTTGTCAAAATTTAAATTCAGAAGAATTGACAGCAATGAGAAACTAGCCGGTACTACACAAGGACCTGCTGGAGGAATAATGACTGAATGCCAGGCTGATTCACCTGTTGAACATGTTCTTGCTGAGGAGGATGCGGAATGCTGCATCTGCCTTTCTTCTTATGACGATGGGGTTGAGCTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGTTGTATATTAATGCTACATGTCCCCTCTGCAAGTATAACATCTTAAAAAATAGCAACCTCAGTCAAGAGGAAGTGTAGAGGGTCGAAGTCCGGAAAGTTTTTAGTAGTAATGTTGAGGAATCTGCACACTTTTGTTTCACGATGTTGATATACAGTTGCTGCTACCACTGCCACTGCTGCTGCTGTGTGCTGTTATTATTTAATGATAGCTTTTCTTATTAGTTATAGTTATTGTGGCTTCTAACTGGTTGTGTATATCAGTGTTGTTCATTGCATACCGGCTATAATTATCCTAAGAGGTAATTTGGTTGTCATTTTTATTTTGGGTTTTATCGTCATATGATCATATCATTATTTTTGTATAT 1711 0.4588 MASTRSPNRSSEDIVDSTPLLSNSGGSSDELTSGRRFARRQRLRQAARFLRQASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDMVWNFAFVVVAGTVLVLSTNEAPGMPLRLWIVGYAMQCVLHMVCVCAEYRRRRRQQRATASSLNSVSVQDRVGSSSGNLSVSSRDDSVSGSAQYVSLGQLDEESTSVAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIDSNEKLAGTTQGPAGGIMTECQADSPVEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKNSNLSQEEV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00400 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 392 IPR013083 -
Pste1g00400 393 MobiDBLite consensus disorder prediction 1 31 - -
Pste1g00400 393 Pfam Ring finger domain 337 379 IPR001841 -
Pste1g00400 393 ProSiteProfiles Zinc finger RING-type profile. 338 379 IPR001841 -
Pste1g00400 393 SMART ring_2 338 378 IPR001841 -
Pste1g00400 393 SUPERFAMILY RING/U-box 328 385 - -
Pste1g00400 393 FunFam E3 ubiquitin-protein ligase At1g12760 324 389 - -
Pste1g00400 393 MobiDBLite consensus disorder prediction 1 35 - -
Pste1g00400 393 PANTHER TARGET OF ERK KINASE MPK-1 53 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00400 Pste-Chr1 1359006 1364282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00400 1 386 C3H Transcription Factor Family AT1G68070 48.072 1.06e-118 347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01751 6 7913424 7918309 Pste1g00400 1 1359006 1364282 PCT