LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g00379	CGGACGCCCCCTTTTTTCCTTTCCTATCCTCTCCATCATTTTAGTCTCCCCTCCGAAACTTCTAGAAACTAAAAACCTACCATCTCTCTCTGCTTCGCACCGCTTCATGCCCTTCATCTTTATCAAAGGTTTGAGTTCCAGATCTGGTAGCGAAGCTGATGGCGCCATTACCGGCGGAGCAAACCGGTGAATCAGCGCCGACGGAGTCTCAGAGATCTATTCCGACGCCGTTTCTGACAAAGACGTACCAGCTCGTGGATGATCCCTCCGCGGATGACCTAATTTCATGGAACGAAGATGGCACGAGCTTCATCGTTTGGCGACCCGCGGAATTTGCACGGGATTTGCTTCCCAAGTATTTCAAACACAACAACTTTTCCAGTTTCGTCCGCCAGCTTAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGATGGGAATTCGCCAACGACTGTTTCCGGCGAGGGGAGAGAGGTCTTCTTCGCGACATACAGCGCCGGAAAATACTGCCGGTACTGCCGCCGGCGACACCTGCAGCAGTCACAGCCAATACGGTGACGGTGGCTGTGGCGGCACTGGCGGTTAGAGCGGTGTCTCCGACGACTTCCGGCGATGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGGAATAATAATAATACAGTGCACCGCACCACAAGTTGCACCACGGCGCCCGAGCTGTTAGAAGAGAATGAAAGGCTTAGGAACGAGAACATGCAACTGAGTCACGAGTTGAGTCAATTGAAGGGTTTGTGTAATAACATACTCGCTTTGATGACCAATTATGCTTCTGGTTTTAGCCGGCAGCAGTTAGAATCGTCCACTAGCGCTGTGAGGACCGTGCCGGTGCCGGAAGGGAAGGCGCTGGAACTTTTGCCTGCGAAGCATGTTTCATCGGCTGAGGACGCCCTGCATGCCAGTGGCGCTGCCGGCGCCGCGGCGGGAGCAACGGGGAATGCGGCAGAAGGGGAGGTTCCAAAGCTGTTCGGCGTTTCGATTGGGCTGAAACGATGCAGGAAAGAGTGCGAGGGCGAAGCGGAGGGAGAAGAACATACGCGAGCACAAACGCAGACACAATCTTCGCAGGAACCAGATGGTGGGTCTGATTTGAAATCTGAACCGCTTGATGGGGATGACTCGGATGATCAGGATCCTCGTTGGCTAGAGCTTGGAAAATAATTGGTGAAGTGACACGTGACTCGTGCCTGCTGCTGTTGCTCACTGCAACAATGCCATTGGGTGACTTGGCAATGTATGCAACCTTACCCTATATGAAAAGGGCGCATTTGTTGTGCCGAATTATTTAACTTGCCCTTGTGGTGAAAAGTCTGAAAGTCAAGTTTGCTTCAGCCCGAACCATGTATTATAAGCAAGTTGGAGTATTCTTGATGCTCCTCGGTTAAAGAGAGATTATCATATCAACTTGTCAAAAATGGACTAACTTGCCAGACCCTTCAAAGGTATTTGTAGAATACAGCAAAATCTGTACATATTTGTCTCACATCCTAAAACGTTTAGATTTTAATCATGTATTATAATGTTTCCATCCTTTTCACCCACTTTTTAAAGTTTTCATAAGTGAAGTATGTTCTTCCAATGAC	1627	0.496	MAPLPAEQTGESAPTESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKILPVLPPATPAAVTANTVTVAVAALAVRAVSPTTSGDEQVLSSNSSPIAGNNNNTVHRTTSCTTAPELLEENERLRNENMQLSHELSQLKGLCNNILALMTNYASGFSRQQLESSTSAVRTVPVPEGKALELLPAKHVSSAEDALHASGAAGAAAGATGNAAEGEVPKLFGVSIGLKRCRKECEGEAEGEEHTRAQTQTQSSQEPDGGSDLKSEPLDGDDSDDQDPRWLELGK	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g00379	348	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	14	318	IPR027725	-
	Pste1g00379	348	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g00379	348	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g00379	348	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g00379	348	MobiDBLite	consensus disorder prediction	150	171	-	-
	Pste1g00379	348	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Pste1g00379	348	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g00379	348	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g00379	348	Gene3D	-	17	115	IPR036388	-
	Pste1g00379	348	MobiDBLite	consensus disorder prediction	1	21	-	-
	Pste1g00379	348	MobiDBLite	consensus disorder prediction	309	323	-	-
	Pste1g00379	348	FunFam	Heat stress transcription factor B-4	17	115	-	-
	Pste1g00379	348	Coils	Coil	180	207	-	-
	Pste1g00379	348	MobiDBLite	consensus disorder prediction	296	348	-	-
	Pste1g00379	348	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g00379	Pste-Chr1	1315819	1317783	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g00379	16	348	HSF	AT4G11660	52.907	6.28e-102	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pste1g00379		HSF_DNA-bind	2.4e-32	CL0123