Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00375 GAAGATGATTCCCTCATTGAACTAGTAAGAAAATATGGTATCAAGAGATGGTCTATCATTGCAAAATACTTACCAGGTCGTATTGGAAAGCAATGCCGAGAGAGGTGGCACAACCATCTTGATCCGACTATAAAGAAGGATGCATGGACAGAAGAGGAGGAACTATTACTTGCTTACTGTCACCAAATATACGGCAGTAAGTGGGCAGAAATTGCAAGGATTCTTCCCGGA 231 0.4199 EDDSLIELVRKYGIKRWSIIAKYLPGRIGKQCRERWHNHLDPTIKKDAWTEEEELLLAYCHQIYGSKWAEIARILPG 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00375 77 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 77 IPR017930 -
Pste1g00375 77 FunFam Transcriptional activator Myb isoform A 1 46 - -
Pste1g00375 77 Pfam Myb-like DNA-binding domain 1 56 - -
Pste1g00375 77 CDD SANT 1 40 IPR001005 -
Pste1g00375 77 ProSiteProfiles Myb-like domain profile. 1 40 IPR001005 -
Pste1g00375 77 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 44 IPR017930 -
Pste1g00375 77 PANTHER MYB PROTEIN-RELATED 1 77 - -
Pste1g00375 77 SUPERFAMILY Homeodomain-like 1 77 IPR009057 -
Pste1g00375 77 SMART sant 1 42 IPR001005 -
Pste1g00375 77 SMART sant 45 76 IPR001005 -
Pste1g00375 77 CDD SANT 48 77 IPR001005 -
Pste1g00375 77 Gene3D - 48 77 - -
Pste1g00375 77 Gene3D - 1 45 - -
Pste1g00375 77 ProSiteProfiles Myb-like domain profile. 41 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00375 Pste-Chr1 1310994 1311489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00375 1 77 MYB Transcription Factor Family AT5G11510 66.234 2.61e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g00375 Myb_DNA-bind_6 2.5e-15 CL0123