Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00374 ATGCGAATTTGGCTTGCGATTCTCTTCCTATTTCAGGATTTGGCTCCTCCTAGGTCTCTTCGCGGAGGTAGACGGAGAGAGTGTTGTTTCTGTGCTTTGTGGTTGGAGATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCTACTCAAACGGCCAGTGGTGCCTTCAAGAGGAGAAGCAAGGTCTGGGCAACCGCAGATGACGAATGGGGGTGCTCAGAAACTGACAACTAATGATGCCCTGGCATATCTCAAGGCAGTAAAGGATATATTTCAGGATAAGAGAGACAAGTATGATGACTTTTTGGAGGTCATGAAAGATTTCAAGGCTCAAAGAATTGATACTGCGGGTGTGATTGCAAGAGTGAAGGAACTGTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGTTATGAAATCACACTTCCATCAGAGGATGAACAACCTCCCCCGAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGATGATCATGTGTACAAATCGTTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAATCTATTACTGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCACCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCTGACGCTTCTGCAGCTGCTTCTACTTATTATGTTTCTGCTCGTAATTCTATGCTTCGTGATAGGAGCTCTGCAATACCAGTACGGCAAATGCATGTTGAAAAGCGAGAAAGGACCATGGTTTCACATGTTGATCGAGACCCCAGTGTTGATCGTCCTGATCCAGATCACGACAGAGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGTCGAGAAGGAAAAGGAACGTAGAGAAGATCGAGACAAGAGGGAGTGTGAAAGGGATGATAGAGATTATGAGCATGATGGAAGTCGTGATAGAGAGCGATTCTCTAGCAAACGGAATCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATGCTGATGAAAATTTTGGTACACGACCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATATACAGTCAAGAGTTTGCTTTCTGCGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTGCATATTTACAGCAGGGAAATAATTACTCGACAAGAGTTGCAGTCATTGGTGGGAGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTACAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGACTGATGGACATGGGCTGAAACCAATGAAGGTTGAAGACAGAGATAGAGATCGGGATAGAGAACGCTATAGAGATGATGGTATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGACAAATCTACTGTGATTGCCAACAAGGATATTTTAGGTTCTAAGATGTCTCTATATCCCAGTAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTTTCGAACTGTGACCAGTGCACTCCTAGTTATCGCCTCTTACCAAAAAATTACCCAATACCTATAGCTACTCAGAAAACAGAACTTGGAGCTGAAGTGTTGAATGATCATTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTTGAAGAGCTGTTAGACAAGATCAATAATAATATAATTAAAGGAGATAGCCCATTCCGCATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACTCGCTTGAAGCAGAAACAAGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCCCTTGATCATCGAAGCTTCTACTTTAAGCAACAGGATACGAAAAGCTTGAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATCAGTGAGAAGAAACGCAAAGAGGATGATGTTCTTCTTGCTGTTGCTGCTGGAAATAGACGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCCAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCGTGTGGAGAAATTTGCACAACTGAACACGTGGATAAAGTCATGAAGATTTGGATAACATTTTTAGAACCCATGCTTTGTGTTCCTTCTCGGCCCCTAGGTGCAGAGGATACAGAGGATGTTGTCAAGGCTAAGAATAATTTTGTTAAAAGCGGCACTGCAAGTGTTACTGAAAGTGATGGTAGCCCTGTTTTAGGTGCTACCATAATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAACTTCTAGTAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCATGATGATCGTGCATTGCATAAAACTGAAACTTTGGGCAGTAATACACAGCATGGTAAAATGAATAGTATTGCATTCACACCTGATGGAATACCAGGGTTTAATAATAAGCAAGACCTGTCCATCGAACGGTTAGTGAATGCTAATGTCTCACCAGCATCTGTAATGGAGCAAAGCAATGGAAAGTCAAACATAGATAATTTGTCAGGACTCACTGCTGCTCCAACTAGACATGGTAATGCTTCTGTTGAGGGAGGACTTGATATACCATCATCAGAGGGTGGTGATTCTACAAGACCAGGTACATCCACAAATGGGGCCATGACCGGGGGCACCAAAGTTCATCGATACCAAGAGGAATCAGTTCGACCCTTCAAAACTGAAAGGGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGATAACTTTGCAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTCTGAGTCGGCAATACCAAAATAGACACGGGGAAGAAATTTGTGGTGAAACCAGAGGAGAAAATGACGCCGATGCTGATGATGAAGGTGAGGAAAGTCCTCACAGGTCATCAGAGGACAGTGAGAATGCATCTGAAAATGTTGATGTTTCTGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCATGAAGATGAGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCAGAAGGAATAGCTGATGCCCATGATGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTACTAACAGTGAAGCCTCTAGCAAAGCATGTACCTCCAATGTTACATGAGAAGGACAGGAACTCACGAGTTTTCTATGGAAATGATTCCTTTTATGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCGGCAAAGATCAACTCATCATCAGCTGATAGGAAATGGAAGGCTTCAAGTGATACAAACTCCAATGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGCCGAGCTATAATTGGAATTCAATCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAATAAGCTTCTTCAATTATATGCATACGAGAAATTGAGAAAGCCTGGAAAATTTGTTGACATAGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGGATAGAATATTCACCTGGATCAGTGAAACTCTCTATTCAACTGATGGACTCTGGACATGATAAACCTGAAGTGACTGCTGTGTCAGTGGACCCTAATTTTTCAACCTATCTACACAATGACTTCCTATCTGTCGTCCCTGACAAAAAAGAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGAAGGTATGCTAGTAATGAGGAATTTTCAATCCAAGCTATGGATGGACTACAGATTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCAAAGGTCTCATACGTTTTAGATACTGAAGACTTTTTGTTTCGGAAGAGAAGGAAAAGAAGAGCCTTGCCGCTGAAGAGTACAGGAACTCATGAACAGGCACAGTCTTCAAAGATTCGTGCTGGGAGAGTACAACGATTCCACAATTTGTTTTCCATTACATGAAAGTGTTTTTTGAGTAATATTTGTCAAATGTCATTGGCAGAGGCGCGGGATGAAAAGGGCATCCAACCCAACAAGTTGATCAAGGGATATTTTTCTGAAAGTATTTTTGCACATTTTCTTTGAGCAACCTAATAAATCTTACAGAATGGGTGGCGCGGCGTGGAGTGGAGGCTGTTGTATACTGTAATTTGAGGGCTCACAATAATGTAAATAAATAGAGGTAATTTGTGATGTAACTAGAGGACTTTTTATTTCATTCATCCATTTTTATTTTTATTTTTATTTTATTTTGTTCTTCCCTCTTAGCGGGTACAGATATTGATCATGGGTCATTCGGTGGCTGCAATTAGCCAGCCGTTTCAAATACAAAGTGTGTAGACTGAGAGTCTGCCCACATCCTTTTTCTTCCCATTTCGTTTGGTATATCACTTTAGCATGTATTCGCCCTAGTTTGCGTCAGACACAATCTAATACCAGGAAGAATGTAGCATACCGAATTCGGCAACCTCTCTAAAATAGTATATTTCGACATGTTGGTACCCAAGTTTACTAAATATAGTTAGGAATTAACTTATATTAATCAGTTG 4982 0.4018 MRIWLAILFLFQDLAPPRSLRGGRRRECCFCALWLEMKRSRDEVFTSCSLLKRPVVPSRGEARSGQPQMTNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTYYVSARNSMLRDRSSAIPVRQMHVEKRERTMVSHVDRDPSVDRPDPDHDRGLLRIEKERRRVEKEKERREDRDKRECERDDRDYEHDGSRDRERFSSKRNRKAEDSGAEPLLDADENFGTRPMSSTCDDKNSLKSIYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWTDGHGLKPMKVEDRDRDRDRERYRDDGMKERDREFRERDKSTVIANKDILGSKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPIATQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNIIKGDSPFRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAVAAGNRRPILPNLEFKYSDPDIHEDLYQLIKYSCGEICTTEHVDKVMKIWITFLEPMLCVPSRPLGAEDTEDVVKAKNNFVKSGTASVTESDGSPVLGATIMNPKHINVSRNGDECMPLDQSTSSKAWQSNGDSGVREDRYHDDRALHKTETLGSNTQHGKMNSIAFTPDGIPGFNNKQDLSIERLVNANVSPASVMEQSNGKSNIDNLSGLTAAPTRHGNASVEGGLDIPSSEGGDSTRPGTSTNGAMTGGTKVHRYQEESVRPFKTEREEGELSPNGDFEDNFAVYGGNGLDAVHKGKDGGLSRQYQNRHGEEICGETRGENDADADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDEEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVPPMLHEKDRNSRVFYGNDSFYVLLRLHQTLYERIQSAKINSSSADRKWKASSDTNSNDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKLRKPGKFVDIVYHENARVLLHDENIYRIEYSPGSVKLSIQLMDSGHDKPEVTAVSVDPNFSTYLHNDFLSVVPDKKEKSGIFLKRNKRRYASNEEFSIQAMDGLQIINGLECKIACSSSKVSYVLDTEDFLFRKRRKRRALPLKSTGTHEQAQSSKIRAGRVQRFHNLFSIT 1464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00374 1464 PANTHER SIN3B-RELATED 75 1321 IPR039774 GO:0003714
Pste1g00374 1464 FunFam Paired amphipathic helix SIN3-like protein 160 231 - -
Pste1g00374 1464 ProSiteProfiles PAH domain profile. 75 145 IPR003822 GO:0006355
Pste1g00374 1464 MobiDBLite consensus disorder prediction 1004 1024 - -
Pste1g00374 1464 SUPERFAMILY PAH2 domain 368 436 IPR036600 GO:0006355
Pste1g00374 1464 MobiDBLite consensus disorder prediction 1116 1130 - -
Pste1g00374 1464 SUPERFAMILY PAH2 domain 75 144 IPR036600 GO:0006355
Pste1g00374 1464 Coils Coil 289 312 - -
Pste1g00374 1464 Gene3D Paired amphipathic helix 368 440 IPR036600 GO:0006355
Pste1g00374 1464 SMART hdac_interact2seq4b 532 632 IPR013194 -
Pste1g00374 1464 FunFam Paired amphipathic helix protein Sin3 81 143 - -
Pste1g00374 1464 MobiDBLite consensus disorder prediction 944 1030 - -
Pste1g00374 1464 Pfam Paired amphipathic helix repeat 184 228 IPR003822 GO:0006355
Pste1g00374 1464 Pfam Paired amphipathic helix repeat 98 142 IPR003822 GO:0006355
Pste1g00374 1464 Pfam Paired amphipathic helix repeat 392 436 IPR003822 GO:0006355
Pste1g00374 1464 MobiDBLite consensus disorder prediction 263 366 - -
Pste1g00374 1464 Pfam Sin3 family co-repressor 535 625 IPR013194 -
Pste1g00374 1464 Gene3D Paired amphipathic helix 81 143 IPR036600 GO:0006355
Pste1g00374 1464 MobiDBLite consensus disorder prediction 944 964 - -
Pste1g00374 1464 FunFam Paired amphipathic helix protein SIN3 368 441 - -
Pste1g00374 1464 ProSiteProfiles PAH domain profile. 161 231 IPR003822 GO:0006355
Pste1g00374 1464 Pfam C-terminal domain of Sin3a protein 1177 1423 IPR031693 -
Pste1g00374 1464 MobiDBLite consensus disorder prediction 465 491 - -
Pste1g00374 1464 MobiDBLite consensus disorder prediction 866 886 - -
Pste1g00374 1464 ProSiteProfiles PAH domain profile. 370 439 IPR003822 GO:0006355
Pste1g00374 1464 SUPERFAMILY PAH2 domain 157 230 IPR036600 GO:0006355
Pste1g00374 1464 MobiDBLite consensus disorder prediction 1045 1130 - -
Pste1g00374 1464 Gene3D Paired amphipathic helix 160 232 IPR036600 GO:0006355
Pste1g00374 1464 MobiDBLite consensus disorder prediction 1046 1070 - -
Pste1g00374 1464 MobiDBLite consensus disorder prediction 983 999 - -
Pste1g00374 1464 MobiDBLite consensus disorder prediction 1078 1092 - -
Pste1g00374 1464 MobiDBLite consensus disorder prediction 263 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00374 Pste-Chr1 1308036 1319193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00374 22 180 WRKY Transcription Factor Family AT4G12020 41.509 1.81e-24 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste1g00374 Sin3a_C 7.9e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00374 1 1308036 1319193 Pste1g00374 1 1308036 1319193 ECH
Pste1g00374 1 1308036 1319193 Pste7g00789 7 7200038 7212900 PCT