LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g00371	GGTTGGAGGTTGGAGGTTGGAGGTTGGAGGTTGAGTTGAGTTGACGATAAGGATAAAGTTGAAAGTTAAAGGGTTTAGGGTTTAGATGGAAGCAGCGGTGGTGGACGTTGGGTCTAAGCTCGTAAAAGCGGGCTTTGCTATTCCTGACCAGACTCCCGCCATGATCATTCCCACTCAGATGAAACAAATGCTCGATGATGGACCAGTCAACGATAATTCACTGCCTGACAGTGTCACCGTTCATCCCGTCCTGCGAGGATTTATTAGAGATTGGGATGCCATTGAGGATTTGTTGCACTATGTTTTATATACTGGTCTTGGATGGGAAATTGGCAATGAAGGACAGATACTATTTACAGATCCACTTTCTACTCCTAAGGCCAACAAAGAACAGTTGGTGCAATTAATGTTTGAAACATTCAACATATCAGGCTTTTATGCCTCAGAACAAGCAGTGTTGTCACTATATGCCGTGGGACGCATCTCGGGCTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCACCAGTAATTGAAGGTGCTGTTCACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTGGCTCAAGAACTTGGAAAGTCCAATCAACAAGTAAATATAAGCTTGTCTGATGTGGAGAAAATAAAAGAGCAATACTCGTGCTGTGCTGAAGATGAATTAGCTTATCAGAAGATCCAATATTCTTGTCCTGTGGAGAAGCACATCCTTCCTGATGGACAGGTCTGCTCTCTGAATTGCTGA	787	0.4295	MEAAVVDVGSKLVKAGFAIPDQTPAMIIPTQMKQMLDDGPVNDNSLPDSVTVHPVLRGFIRDWDAIEDLLHYVLYTGLGWEIGNEGQILFTDPLSTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGIDLTNFLAQELGKSNQQVNISLSDVEKIKEQYSCCAEDELAYQKIQYSCPVEKHILPDGQVCSLNC	233

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g00371	233	SMART	actin_3	1	233	IPR004000	-
	Pste1g00371	233	Gene3D	-	5	122	-	-
	Pste1g00371	233	CDD	NBD_sugar-kinase_HSP70_actin	4	168	-	-
	Pste1g00371	233	SUPERFAMILY	Actin-like ATPase domain	2	138	IPR043129	-
	Pste1g00371	233	FunFam	Actin-related protein 7	4	127	-	-
	Pste1g00371	233	PANTHER	ACTIN	4	231	IPR004000	-
	Pste1g00371	233	Gene3D	Actin; Chain A, domain 4	173	206	-	-
	Pste1g00371	233	Gene3D	-	123	172	-	-
	Pste1g00371	233	Pfam	Actin	2	230	IPR004000	-
	Pste1g00371	233	SUPERFAMILY	Actin-like ATPase domain	131	231	IPR043129	-

Showing 1 to 10 of 14 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g00371	Pste-Chr1	1294305	1296518	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g00371	5	233	Cytoskeleton Gene Families	AT1G49240	32.520	3.90e-30	113

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste1g00371	1	1294305	1296518	Pste1g00371	1	1294305	1296518	ECH

Showing 1 to 1 of 1 entries