Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00359 ATGACCAACCATACTTGTTATGCCTGCCTTGCTACGTTGTTGCTTTTGCTGGGTCTGTGTCAAGGCATTTGTGGGCAGACACAAGTTGAGGCACTTCTCAGGTGGAAACAAAGTCTCCCTTACCAAACCATTTTGGACTCATGGCTCATTAATTCCACTTCCACTGCAACTCCATGTTCATGGCGAGGTATTACCTGTGATTCTCAAGGTACTGTCACAATTATAAACTTAGCTTACACGGGACTTTCAGGTACCCTTCAAAACTTGAACTTTTCTGTTTTTCCTAACCTTCTTCGTCTTGATCTCAAAGTAAACAACCTCACTGGCCCCATACCACAAAACATTGGCCTCCTCTCAAACCTCCAATTCCTTGACCTCTCCACCAACTATTTCAATGGCACTCTTCCTCTTTCCATATCCAATCTGACTCAAGTTTACGAGCTTGATGTTTCAAGAAATTATATAACTGGGATATTAGACCCCCGATTATTCCCCGATGGATCTGCCCACCCAAAAAGTGGCCTCATTGGTATTCGGAATCTCCTCTTCCAAGATACCTATTTAGGTGGCACAATCCCAAATGAAATAGGGAACATCAGAAACTTGACTCTTCTAGCTCTAGATGGAAACAACTTCTATGGTTCTATTCCTTCATCTCTAGGCAACTGCTCACATTTAAGTATTCTTAGGATGCCCCAGAACCAACTCACGGGCCCAATACCCCCTACCATTGGTAAACTAACCAATCTAACTGATGTGCGCTTTCAAATTAACAACTTAAATGGTACGGTGCCACCAGAATTAGGTAACTTGTCTTCATTGATAGTGTTGCATCTTGCTGAGAACAACTTCGTTGGTGAATTACCACCACAAGTGTGCAAAAGTGGCAAACTAGTAAATTTCAGTGCAGCCCACAATGCTTTCACTGGACCAATTCCCAGAAGCCTTAGAAACTGCCCAGCCTTGTACAGAGTTCGACTTGAATACAATCAGTTGACTGGTTATGCGGATCAGGACTTTGGAGTGTATCCAAACCTAACTTACATGGACTTCAGCTATAATAGAGTGGAAGGTGACCTCTCTGCAAATTGGGGTGCTTGCAAAAACTTGCAATATCTCAACATGGCTGGGAATGGAGTAAGTGGCAACATTCCGGGTGAAATTTTTCAGTTGGAAAAACTGCAAGAGCTTGACCTATCCTCCAACCAAATATCTGGAGAGATTCCTCCACAGATAGGAAATTCCACCAACCTCTATGAGTTAAATTTTAGTGATAACAAACTCTCTGGTATGCTACCAGCAGAAATTGGAAAGGTTTCCTATTTGCGGTCCTTAGACCTTTCGATGAACATGCTGTTGGGCCCAATCCCAAATCAGATAGGGGACATCTCCAACTTGCAGAATTTAAATCTGAGCAACAATAACTTCAATGGCACAATCCCCTACCAAGTTGGAAACCTTGAATCTTTACAAGACTTTTTGGACTTGAGTTACAATTCACTTTCGGGAGATATTCCTTCTGATCTTGGGAAGCTTTCAAATTTGATAAGCTTGAATATCTCTCACAACTATCTGTCAGGTCCTATCCCTGACTCCCTTAGTAAAATGATTAGTTTGTCAGCCATCAACCTCTCCTACAACTATTTAGAGGGTTCTGTTCCTGAAGGTGGCATATTCAATTCTTCTCATCCCCTGGATTTGAGCAACAACAAAGATTTATGCGGGAATATTCGAGGTTTGCGTCCTTGTAATGTCTCTCTCACTAAACCTCATGGTGGATCAAGTAACAAAAAGAAGGTTGTGATTCCAATTGTTGCTTCCTTGGGAGCTTCTCTTTTTATTTCTTTGGTGTGTGTTGGGATTGTTTTCTTTTGCTATAAGGGAAGGTCAAGAACTCAAAGAAAAAAAAGTTCAATCAAAAGACCAGATCCATTTTCAATTTGGTATTTCAATGGTAGAGTTGTTTATGCAGACATAATGGAAGCTACCAAGAACTTCGACAACCTGTGTTGCATCGGGGAAGGAGCATTGGGAAAAGTTTATAAAGCGGAGATGAAAGGAGGTCAAGTATTTGCTGTAAAAAAGTTGAAGTGTGATACAGAAAGCTTAGACATGGAGAGTATAAAAACCTTCCAGAATGAGGTAGAAGCCATGTTAGAAACACGCCACCGAAACATTGTCAAGCTTTACGGATTTTGCTCTGAAGGGATGCACACATTTTTAATTTATGAGTATATGGATAGAGGGAATTTAGCTGACATGCTGAGAGAAGACAAGGATGCTTTAGAATTGGATTGGCCTAAGAGGGTTGATATTATCAAAGGTGTAGCAAGAGCTTTGTCCTATATGCATCATGATTGTTCTCCACCTTTAATTCACAGAGACATATCGAGCAAGAACGTTTTGTTGTCCTCCAGTCTTGAAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCTGATTCACCTCTATGGACATCATTCGCTGGCACATATGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGCAGTGACTGAGAAATGCGATGTGTTTAGCTTTGGCGTTTTGGCTTTTGAGGTTCTTACAGGAAAGCACCCCGGGGACCTTGTTTCTTACATACAAACTTCAAGTGAACAGAAAATAAACTTCAAAGAGATTTTAGACCCTCGCCTCTCGCCTCCTTCAAAGAATAATATTTTGAAGGAATTGGCGTTGATTGCTAACCTAGCTCTTTCATGTTTACATACAAACCCTCAATCTCGACCAACTATGCGAAACGTGGTTCAGGTCTTTGAAATGGACACTGCACATATTAGATAACTCTGTATTTTTCCTTTCTGGTTTTGTCGTAAACAATTTTCGATCTTGTGCATATGTTTTCATTTGCCATGTAGACCCTTACGTTGTATTTTGTATCATATCATATCCTTCACCATAGACCACAGTGAATAATGCTTTCCCTTGCATAACAAGCAATGTATTGAATGGAATGGTTAGAATATTTTGTTCTTGAACAATCATGCTTTTCTATATGATAAGGGTACAAAAAATAGTAAAGTATGGCTATTGG 3079 0.4066 MTNHTCYACLATLLLLLGLCQGICGQTQVEALLRWKQSLPYQTILDSWLINSTSTATPCSWRGITCDSQGTVTIINLAYTGLSGTLQNLNFSVFPNLLRLDLKVNNLTGPIPQNIGLLSNLQFLDLSTNYFNGTLPLSISNLTQVYELDVSRNYITGILDPRLFPDGSAHPKSGLIGIRNLLFQDTYLGGTIPNEIGNIRNLTLLALDGNNFYGSIPSSLGNCSHLSILRMPQNQLTGPIPPTIGKLTNLTDVRFQINNLNGTVPPELGNLSSLIVLHLAENNFVGELPPQVCKSGKLVNFSAAHNAFTGPIPRSLRNCPALYRVRLEYNQLTGYADQDFGVYPNLTYMDFSYNRVEGDLSANWGACKNLQYLNMAGNGVSGNIPGEIFQLEKLQELDLSSNQISGEIPPQIGNSTNLYELNFSDNKLSGMLPAEIGKVSYLRSLDLSMNMLLGPIPNQIGDISNLQNLNLSNNNFNGTIPYQVGNLESLQDFLDLSYNSLSGDIPSDLGKLSNLISLNISHNYLSGPIPDSLSKMISLSAINLSYNYLEGSVPEGGIFNSSHPLDLSNNKDLCGNIRGLRPCNVSLTKPHGGSSNKKKVVIPIVASLGASLFISLVCVGIVFFCYKGRSRTQRKKSSIKRPDPFSIWYFNGRVVYADIMEATKNFDNLCCIGEGALGKVYKAEMKGGQVFAVKKLKCDTESLDMESIKTFQNEVEAMLETRHRNIVKLYGFCSEGMHTFLIYEYMDRGNLADMLREDKDALELDWPKRVDIIKGVARALSYMHHDCSPPLIHRDISSKNVLLSSSLEAHVSDFGTARFLKPDSPLWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEVLTGKHPGDLVSYIQTSSEQKINFKEILDPRLSPPSKNNILKELALIANLALSCLHTNPQSRPTMRNVVQVFEMDTAHIR 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00359 942 FunFam Leucine-rich repeat receptor-like protein kinase TDR 268 585 - -
Pste1g00359 942 Gene3D Ribonuclease Inhibitor 25 168 IPR032675 -
Pste1g00359 942 Gene3D Ribonuclease Inhibitor 169 268 IPR032675 -
Pste1g00359 942 Pfam Leucine Rich Repeat 514 535 IPR001611 GO:0005515
Pste1g00359 942 Pfam Leucine Rich Repeat 393 412 IPR001611 GO:0005515
Pste1g00359 942 FunFam Leucine-rich repeat receptor protein kinase MSP1 629 745 - -
Pste1g00359 942 SMART LRR_typ_2 391 415 IPR003591 -
Pste1g00359 942 SMART LRR_typ_2 199 223 IPR003591 -
Pste1g00359 942 SMART LRR_typ_2 118 142 IPR003591 -
Pste1g00359 942 SMART LRR_typ_2 463 487 IPR003591 -
Pste1g00359 942 SMART LRR_typ_2 512 536 IPR003591 -
Pste1g00359 942 SMART LRR_typ_2 271 295 IPR003591 -
Pste1g00359 942 FunFam MDIS1-interacting receptor like kinase 2 746 940 - -
Pste1g00359 942 Gene3D Ribonuclease Inhibitor 273 585 IPR032675 -
Pste1g00359 942 SUPERFAMILY RNI-like 240 571 - -
Pste1g00359 942 ProSiteProfiles Leucine-rich repeat profile. 393 415 IPR001611 GO:0005515
Pste1g00359 942 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Pste1g00359 942 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 173 263 - -
Pste1g00359 942 SUPERFAMILY Protein kinase-like (PK-like) 640 935 IPR011009 -
Pste1g00359 942 PANTHER LEUCINE RICH REPEAT KINASE 2 220 938 - -
Pste1g00359 942 ProSiteProfiles Protein kinase domain profile. 666 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g00359 942 FunFam Nuclear pore complex protein NUP107 25 164 - -
Pste1g00359 942 Gene3D Phosphorylase Kinase; domain 1 628 745 - -
Pste1g00359 942 Pfam Protein kinase domain 671 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g00359 942 SMART serkin_6 666 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g00359 942 SUPERFAMILY RNI-like 38 289 - -
Pste1g00359 942 ProSitePatterns Tyrosine protein kinases specific active-site signature. 791 803 IPR008266 GO:0004672|GO:0006468
Pste1g00359 942 Gene3D Transferase(Phosphotransferase) domain 1 746 940 - -
Pste1g00359 942 CDD STKc_IRAK 672 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00359 Pste-Chr1 1264275 1267485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00359 28 839 Receptor kinase-like Gene Family AT4G08850 38.767 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste1g00359 Pkinase 4.2e-49 CL0016