Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00301 ATGGAGGCCGTGGAGAATCACGCACCTCCAGAGTATCCCAACTCGTCGCAGCATCAATCTGAAACTGGACAAAACGGTAACGGCATCAACGACGGAAAACCATCGGAGAACAACGGTTTGCATCCTCAGATATCGAAACCATTGATCTCCGAAGGATTGACGCGGAGCGGCACCGACAGGGACCAGTCAGGCGGCGAGGAGGAGACAACCAGTAAGCGGCGGCGGCGTAGCCGATGGGATCCGCAGCCAGAATCGAACGATCAGAGCGGCGGCGAATGTGGCAGTGGACCGAAGAAGAGGAAGTCTCGTTGGGCCGACGATGAGCCCAAGCCGGTGATTCAGCTTCCTGATTTTATGGGCGGTATTGAATTCGATCCCGAGATTCAAGCTTTGAACAGTAGGCTTCTTGAGATTAGTCGAATGTTACAGTCCGGTTTGCCCTTAGATGATCGTCCTGAAGGTGCTCGATCCCCTTCGCCTGAACCTATATATGATAACATGGGCATTAGGATTAACACCAGGGAATATCGTGCGCGTGAGAGACTACAAAAAGAGAGGCAGGAAATTATATCTCAGATTATTAAAAAGAATCCTGCTTTTAAGCCACCTGCCGATTATAGACCACCCAAGCTTCAGAAGAAGCTTTATATACCGATGAAGGAATACCCTGGTTATAATTTCATTGGCCTTATTATTGGTCCTAGAGGTAACACTCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATCGTGATTCGTGGCAAAGGATCCGTGAAAGAGGGCAGGCTGCAGCAGAAGAGGGATTTGAAACCTGACCCTTCTGAGAATGAAGATTTGCATGTTTTGGTGGAGGCTGAGACCCAGGAGTCGCTCGAGGCTGCTGCTGGCATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCATTGAACGGGACGATCAGGGATGAAGAGTATTGCAGGCTTTGTGGTGAACCTGGACATCGCCAATATGCGTGTCCTACTAGGACTTCAACTTTTAAGAGTGAAGTTGTATGCAAGCATTGTGGGGACGGCGGTCATCCTAGCATAGATTGTCCTGTCAAGGGTGCTACTGGGAAAAAGATGGATGATGAGTATCAGAATTTTCTAGCAGAGTTGGGAGGTTCGGTTCCTGAATCTGCAACAAAGCACACCAGTACTTTGGCAATTGGTGCAGGCCCTTCTGGAACCAATCCTCCTTGGGCTAACAATTCTGGAATGGCTGGTGGTGCTCCTCAAGCTGGCTTAGGAGCTACTACAGTTAAAAAAGAAATTGATGATACGAATTTGTACATAGGGTATCTGCCACCCACTCTTGATGATGATGGCTTGATCCAATTATTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATAAAGGATCGAATATCGGGTTTAAGTAAAGGATATGGTTTTGTGAAGTACGCTGATATCACAATGGCAAACAATGCAATCATGGCCATGAATGGATATCGCCTTGAGGGGCGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTTCCTCCTGGCCCACCAGCATCTGCTGTTCCCACTTATCCTGTTCCAAGCCAGCCACTTGGTGCTTACCCATCCCAACAGTATGCGGCTGGGGCCCCCCTAGGGAGTGCTCCTCCTGTGAGTTACGGTGGTACCCCAGTGCCATGGGGACCCCCTGTTCCTCCTCCATATGCTCCCTATGCTCCTCCTCCACCCGGGTCCACTATGTATCCACCTATGCAAGGTCAACCTATACCTTCTTATGGGGTTCAATATCCTCCTCCTGTCCAGACTGGCCCTCCCGGTGCCCCATCCCAGCCTGCAACTTCCAGTGAAATGCAACAGAGTTACCCTCCTGGAGTGCAGTCTGACAATGGTACCTCAGCCCAGGCTGTACCAGCCAATGTATATGGTAACACAGTACATTCAATGCCACCTGCGGCTCAACCTACATATCCTGCATCTTATGGATATCCGCCTTACTATAATGCTGTTCCTCCACCACCTCCCCCTCCTGCCCCTATTCCGGTCTCAACTTCAGACCAATCCCACAACATTGCTAATGTACCATGGGCCAGTAATTCTCTAGTTCCACCTCCTGCTTCATCGGCAGACAAGACAACTTATGGGGCAGATCAATCCCAAAGCATTGGAAATGTGCCTAGAGCCACAAATACATCAGCGCCTCCTCCTGCTTCAACAGCTGAGAAGACTTCATATGCTGCTGACTCGGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2337 0.4942 MEAVENHAPPEYPNSSQHQSETGQNGNGINDGKPSENNGLHPQISKPLISEGLTRSGTDRDQSGGEEETTSKRRRRSRWDPQPESNDQSGGECGSGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKHTSTLAIGAGPSGTNPPWANNSGMAGGAPQAGLGATTVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRISGLSKGYGFVKYADITMANNAIMAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYAAGAPLGSAPPVSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPIPSYGVQYPPPVQTGPPGAPSQPATSSEMQQSYPPGVQSDNGTSAQAVPANVYGNTVHSMPPAAQPTYPASYGYPPYYNAVPPPPPPPAPIPVSTSDQSHNIANVPWASNSLVPPPASSADKTTYGADQSQSIGNVPRATNTSAPPPASTAEKTSYAADSEYEKFMAEMK 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00301 778 SMART kh_6 211 303 IPR004087 GO:0003676
Pste1g00301 778 MobiDBLite consensus disorder prediction 599 654 - -
Pste1g00301 778 ProSiteProfiles Type-1 KH domain profile. 226 298 - -
Pste1g00301 778 Gene3D - 427 530 IPR012677 -
Pste1g00301 778 ProSiteProfiles Zinc finger CCHC-type profile. 333 347 IPR001878 GO:0003676|GO:0008270
Pste1g00301 778 ProSiteProfiles Zinc finger CCHC-type profile. 359 373 IPR001878 GO:0003676|GO:0008270
Pste1g00301 778 PANTHER RNA-BINDING PROTEIN RELATED 61 562 IPR045071 -
Pste1g00301 778 FunFam splicing factor-like protein 1 203 331 - -
Pste1g00301 778 MobiDBLite consensus disorder prediction 60 82 - -
Pste1g00301 778 MobiDBLite consensus disorder prediction 1 112 - -
Pste1g00301 778 CDD KH-I_BBP 210 303 - -
Pste1g00301 778 MobiDBLite consensus disorder prediction 147 166 - -
Pste1g00301 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 448 526 IPR000504 GO:0003723
Pste1g00301 778 Pfam KH domain 226 298 IPR004088 GO:0003723
Pste1g00301 778 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 211 337 IPR036612 GO:0003723
Pste1g00301 778 FunFam splicing factor 1 331 384 - -
Pste1g00301 778 FunFam splicing factor-like protein 1 428 530 - -
Pste1g00301 778 Gene3D - 332 384 - -
Pste1g00301 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 450 519 IPR000504 GO:0003723
Pste1g00301 778 Gene3D - 125 202 IPR047086 -
Pste1g00301 778 Pfam Splicing factor 1 helix-hairpin domain 100 207 IPR032570 -
Pste1g00301 778 MobiDBLite consensus disorder prediction 10 59 - -
Pste1g00301 778 MobiDBLite consensus disorder prediction 612 626 - -
Pste1g00301 778 SUPERFAMILY Retrovirus zinc finger-like domains 329 375 IPR036875 GO:0003676|GO:0008270
Pste1g00301 778 SUPERFAMILY RNA-binding domain, RBD 444 536 IPR035979 GO:0003676
Pste1g00301 778 MobiDBLite consensus disorder prediction 94 110 - -
Pste1g00301 778 MobiDBLite consensus disorder prediction 408 429 - -
Pste1g00301 778 MobiDBLite consensus disorder prediction 408 424 - -
Pste1g00301 778 SMART rrm1_1 449 522 IPR000504 GO:0003723
Pste1g00301 778 Gene3D K Homology domain, type 1 203 331 IPR036612 GO:0003723
Pste1g00301 778 MobiDBLite consensus disorder prediction 256 277 - -
Pste1g00301 778 MobiDBLite consensus disorder prediction 627 654 - -
Pste1g00301 778 MobiDBLite consensus disorder prediction 714 764 - -
Pste1g00301 778 SMART c2hcfinal6 358 374 IPR001878 GO:0003676|GO:0008270
Pste1g00301 778 SMART c2hcfinal6 332 348 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00301 Pste-Chr1 1070149 1072485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00301 448 579 Eukaryotic Initiation Factors Gene Family AT3G16380 30.216 1.36e-12 68.9