LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g00293	TAATAAGAGTTGGAGTGAAAGACAAGAAAAAAAGAGGGAAGGCGGTGAAGGAGAACCAGAAGCCATACTAATAAATTAGGTGCGTTCTTCTGTGGCGGACACCCATTTTGCAATTCCTATATTTTCTTGGTTCCCACGAACCCAAATCAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTATCGTATTGGAAGAGAGGAACAAGAAGAAGCTCTGGATTCCACCTCTTCCCGTCCTTTGAGACGGTTGTTATGATTCAGGTTGGTCTGGGTTTGAATCTAAAAAAGGATCGTGATTTAAATTTTGAGACATGGAGGGAGTTTGTTTCTGGACAAATTGCTACCAGTATCGGTTTTTTGCATTCCAAGAAGTGCTTGATTGGCGATTTTTCATCCTTGGAGATTTTCTTCGGGTTTCCTTTGTTAATTGCACTTAGTGTTCTGCTCCCCTTTAATGACCAGCACAGGGTACGTGATGCGACTTTCTTCTGATACAGGTGCTGCATCTTTTGTGCACTTGTACAATGCATTGCTGACCCAACATTCAGTTAAAACTTCTGGTAAATCCTCTTCTTGGTACAGGGCTGAAGCATATAGATTGGTGACTGAATATTGGATTCTGCCTGCATCTTTCAGTGAAGCATTTGCATTGAATCACTGCGGACTAAAGTGCTGCTTTGTGTTCCCCGAGAACCATGGAGAGGTTGCTATCAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTTAACCTGAGAGAAGTCAAGTCTTTACGTAAAATGAACCACCCAAATATTGTGAAGCTGAAGGAGGTTATTCGAGAAAGTGACATTTTGTACTTTGTTTTTGAGTACATGGAATACAACCTATACCAACTTATGAAAGATAGGCAAAAACTGTTTTCTGAAGCTGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTCTTGCATACATGCACCAGCGTGGATACTTCCATCGTGACCTAAAGCCTGAAAACTTGCTTGTTACCAAGGATATAATCAAAATTGCTGATTTTGGCCTAGCACGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGGTATCGTGCTCCTGAAGTGCTGCTTCAGTCTTATCTATATACCTCTAAAGTTGACATGTGGGCGATGGGTGCTATAATGGCTGAGCTTTTCTCTCTCCGTCCTCTTTTCCCAGGTGTCAGTGAAGCGGATGAGATCTATAAAATATGTGGTGTGATAGGCAATCCTACCCATGAATCTTGGGCTGATGGACTCAAACTTGCAAGAGATATTAACTACCAGTTTCCACAGCTTGCTGGTGTGCATCTTTCTGCTTTGATCCCATCTGCAAGTGATGATGCAATCCGCCTTATCACAGTAATCACTTTGCTCTTGGGATCCATGCAAGAGGCCAACAGCTTCAGAGGCCCTGCAACATCCTTTCTTCCAGCTGGAACCCGGGGAGCATTGGATCAGCCAGGGGTCAAGAGATATTCTGGTGCTTTACCTAATTCAAAGCTCACCAATAGTTTTTCCTCCTTGAAATATCCTCCTCTAGCTTCAGGTGTGCAGCGGAAGCTGGATATGGTAAATCAGGATGGAATTAAGAACGAAAAACCAATGAGGCCTACTAAACCAAAATATCGACCGCCAGGAAAGGACAACCCAACTTCTATGAACAACGGTAGGTATGCACGTGGTGTTTCAGAAACAGCTGAGAAGTTAGCCAATTTGTCTGTTACTAGTCGAAGACAATCAATGGTGCAACCTCGTCCTCCACCTATGAAGGCTGGAGTCAATTGGATTTCTGAATCTGGAAACTTCATCCTTGGTCCTGCACAGCAGATTCCGACGGGAGGAACTTTCACAAGAAAAGTTGCTGGATGAGTAAATGTGGGAGATTATATAATGCTCACTGTTGTGAATGTCCTAATATGACTAGTGTGTTTGGACAATATATTCTGATAACTTTGCAAGTCTAAACTGCAAAACTAGTATTGCCTGTGTCATTACTTATTGGTAATCGTATCGTACTTGTGGGGACATAGAGCTAAGCTGATGTTTTTTAATAATAATGCGAGAGCTTATAAATAAAGTTTTTCCCAACTTGTATGATGTTGAATGTGCTGCACACGGTACACACATTTATTAGGTGGTGGTGTTCATAAATCTTGTCTATAAAGTAGTAATAATTTTGTTGAGACTCCGATATAGGGAGAAATTTTGATTTTTGACTTATTCCAGTTACATGATCTGGTG	2280	0.4162	MTSTGYVMRLSSDTGAASFVHLYNALLTQHSVKTSGKSSSWYRAEAYRLVTEYWILPASFSEAFALNHCGLKCCFVFPENHGEVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMEYNLYQLMKDRQKLFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSYLYTSKVDMWAMGAIMAELFSLRPLFPGVSEADEIYKICGVIGNPTHESWADGLKLARDINYQFPQLAGVHLSALIPSASDDAIRLITVITLLLGSMQEANSFRGPATSFLPAGTRGALDQPGVKRYSGALPNSKLTNSFSSLKYPPLASGVQRKLDMVNQDGIKNEKPMRPTKPKYRPPGKDNPTSMNNGRYARGVSETAEKLANLSVTSRRQSMVQPRPPPMKAGVNWISESGNFILGPAQQIPTGGTFTRKVAG	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g00293	484	MobiDBLite	consensus disorder prediction	389	405	-	-
	Pste1g00293	484	Pfam	Protein kinase domain	80	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g00293	484	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	175	187	IPR008271	GO:0004672\|GO:0006468
	Pste1g00293	484	Gene3D	Transferase(Phosphotransferase) domain 1	138	321	-	-
	Pste1g00293	484	ProSiteProfiles	Protein kinase domain profile.	8	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g00293	484	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	80	314	-	-
	Pste1g00293	484	SMART	serkin_6	68	303	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g00293	484	CDD	STKc_MAK_like	79	315	-	-
	Pste1g00293	484	MobiDBLite	consensus disorder prediction	389	419	-	-
	Pste1g00293	484	SUPERFAMILY	Protein kinase-like (PK-like)	79	315	IPR011009	-
	Pste1g00293	484	Gene3D	Phosphorylase Kinase; domain 1	79	137	-	-
	Pste1g00293	484	FunFam	serine/threonine-protein kinase MAK isoform X1	138	324	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g00293	Pste-Chr1	1043284	1050134	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g00293	70	314	MAP Kinase Gene Family	AT4G11330	39.382	2.32e-50	174

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_RCK	Pste1g00293		Pkinase	1.6e-57	CL0016