Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00288 GTTCAGCTGAAGCGAATTGAGAACCCTGTTCACAGACAAGTTACCTTCTGCAAGCGCCGAACAGGGCTTCTTAAGAAGGCTAAGGAACTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGGTCTCCGGGTCTCTCTATTATATTATATTTATGCTCAAAATGCTTATATATGTTATGCTCTCTCACTTTTCACTTTCATTTTTTTTCTGCATCATCAAAGAACCATGCAAGACCTCATCGAGAGGATGCAAAAGAGGAAACGAATGTCCTAAAACAGGAAATCCAAACATTGCAAAAGGGCATCAGGTATTTGTTTGAAGGAGAAAATAAGATAATGACAATTGATGAATTACAAGCATTAGAGAAGAATCTCGAAATTTGGATATACCATATTCGTTCAACGAAGATGAACATCATGTTACAAGAAATTCAAGCTTTAAAAGATAAGGTTAGTACATAA 507 0.3787 VQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGSPGLSIILYLCSKCLYMLCSLTFHFHFFSASSKNHARPHREDAKEETNVLKQEIQTLQKGIRYLFEGENKIMTIDELQALEKNLEIWIYHIRSTKMNIMLQEIQALKDKVST 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00288 168 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 51 IPR002100 GO:0003677|GO:0046983
Pste1g00288 168 Gene3D - 10 109 IPR036879 GO:0003677|GO:0046983
Pste1g00288 168 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Pste1g00288 168 SUPERFAMILY SRF-like 1 56 IPR036879 GO:0003677|GO:0046983
Pste1g00288 168 ProSiteProfiles K-box domain profile. 96 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g00288 168 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 150 - -
Pste1g00288 168 Coils Coil 96 116 - -
Pste1g00288 168 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Pste1g00288 168 Pfam K-box region 95 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g00288 168 PRINTS MADS domain signature 18 33 IPR002100 GO:0003677|GO:0046983
Pste1g00288 168 PRINTS MADS domain signature 33 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00288 Pste-Chr1 1011969 1014103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00288 1 165 MADS-box Gene Family AT1G71692 59.036 3.40e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste1g00288 K-box 1.7e-15 No_clan