Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00280 GGAAGGGTAGGGTGCCCTCACCTGGTAGTTAGTCAGAGTAAAGCAATGGCGAAGTTGTTAGCGTTAAGTTGCTGGCGAAACCTCTCTCCGCGTCCTCACTACCCGTCCATGCCGAAATACCCCAAGGCCAAGGGTCAGGCTGCCGCCGTCGACGAGCTTGCAGAGTCCACCGCTCTTCTCTCCGTCGTCGGAATGACCTGCGCCGCCTGCGCTGGTTCCGTCGAGAAGGCCATCAAACGGCTCCCCGGGATCCGCGAAGCCATCGTCGACGTCCTCAACAACCGTGCCCACGTCATCTTCTATCCCTCCTTCGTTAACGAGGAGACAATTCGCGAGGCCGTTGAGGACGCGGGTTTCCAAGCAGCGTTACTCGTCGACGCCACGCGTGTCCACGTGGACATTCAACTCTGCCGCATACAGATCAAAGGAATGACCTGCACCTCCTGTTCCTCCGCGCTCGAATCCGTTTTGCAAGCCCTTGACGGCGTTCTCGAAGCCCAGGTGGGCCTGGCCACCGAAGAGGCCCAAGTCCACTACAACCCCAACCTCCTCACCCTCGACCACATTCTACATGCCATACAACATGCTGGATTCGAAGCCCAGCTCATCAGTTCAAGCCAAGACTTAAGCAAGATAGACCTCCACGTCGAAGGCGCAGTATCCCACGAGCCTTCCTTAGAACTGATACAACATTCTCTGCGCTCCCTTCCAGGAGTCCTTGCGGTGGACATAACCGCCGAACTAAACAAAATATCTGTTTCTTACAAACCAGACGTCACGGGACCCAGACTTCTTATTAACGCGATTCAGGATACAGCGAATGGCAATTTGAAGGCGAACATATATCCTACAGAAGAGGGACAGAGAAATTCTCACAGACGCCAGGAAACAAAACAGTACTATAAATCTTTCTTATGGAGCTTGGTGTTTACTGTTCCTGTGTTTCTCACCTCCATGGTGTTTATGTATGTTCCCGGAATCAAGGACGCGCTTGATGCCAAAATTGTGAACATGCTCACAGTAGGGCAGGTTGCACGGTGGGTGCTGTCCACGCCTGTTCAGTTTGTTCTCGGCTGGCGATTTTACTACGGTTCTTATAAGTCATTGCGCCGTGGCTCTGCCAACATGGATGTTCTCATTGCCTTGGGAACAAACGCCGCGTATTTTTATTCTGTCTACTCTGTTTTAAGAGCTGCTACGTCTCCACATTTCGAGGGGAGTGATTTCTTTGAGACCAGTGCGATGCTTATTTCGTTCATTCTGCTTGGCAAGTATCTTGAGATTTTGGCCAAGGGGAAGACCTCCGATGCCATTGCGAAGCTCATGAACTTGACTCCCGACACGGCGGTTTTGTTGACTTTGGATGGTGATGGGAATGTTGTTGGGGAGGAGGAGATTGATAGCAGGTTGGTTCAGAAGGATGATGTGATTAAGGTTGTTCCTGGGGGCAAAGTGGCTTCCGATGGGTTTGTCGTGTGGGGACAGAGTCACGTGAATGAGAGCATGATAACGGGGGAGGCGCTTCCCGTGGCCAAGAGGAAAGGGGACTCTGTTATTGGAGGGACTGTGAATGAGAATGGTGTTTTGTATGTTAAGGCCACTAGGGTGGGATCGGAGAGTGCTCTTTCTCAGATTGTTCGGCTTGTTGAGTCAGCTCAGATGGCTAAAGCACCAGTGCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGGTGATTGTGATTTCGTTCACCACTTGGCTTGCCTGGTTTTTGGCTGGAAGATTCCATGTTTATGCCAAGTCTTGGATACCGTCCTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATGTCTGTCATGGTCATAGCCTGTCCTTGTGCTTTGGGTTTAGCAACCCCAACTGCGGTTATGGTTGGCACTGGAGTTGGTGCTTCTCAGGGTGTGCTCATCAAAGGAGGGCAAGCATTAGAGAGTGCACATAAGGTGGACTGCATTGTTTTTGATAAGACAGGTACTCTCACTGTTGGGAAACCTGTGATAGTGAGAACAGAATTATTGACAAAAATGGTGCTCCAGGAATTCTATGAACTTGTGGCTGCAGTTGAGGTAGTCATCTCCCCAATCTCCTCAAAGACATTGCCTCATTCTTTTTATCTGGAGTTACTGCTCCAATTTAATTTGTCAACTGCTCTAGTGCTTCTAAAATTCATGGATTATAGATGCTTGCATGTCATAAACATTGCCATTAATTTGACTTGCCTATCTCAGGTGAATAGTGAGCATCCACTGGGCAAGGCCATTGTTGAGTATGCTAAAAAATTTAGAGATGAAGAGAACCCTTCCTGGCCGGAAGCACAAGATTTTGTTTCCGTTACTGGACATGGAGTAAAGGCCACTGTTCATAACAAGGAGATAATTGTGGGTAATAAGAGTTTGTTGGATGACAATAGTGTTGCAATTCCTGTTGTTGCTGAGGATATGCTTGCTGAAGCCGAAACAATGGCTCAGACAGGAATTTTGGTATCTATAAATGGGAAAGTAGCTGGCGTTTTAGCAGTATCTGATCCATTGAAACCAGGTGCTCAAGAAGTCATTTCCATTCTCAAGTCCATGAAAATCAAGAGCATAATGGTGACTGGAGACAACTTTGGAACTGCTAGTTCTATTGCTAGAGAAGTAGGAATTGAAAGTGTTATTGCAGAGGCCAAGCCTGACCAGAAAGCGGAGAAAGTGAAAGACTTGCAGGCTTCTGGGTACACCGTGGCTATGGTGGGGGATGGTATCAATGACTCGCCTGCACTTGTGGCAGCAGATGTGGGAATGGCAATAGGTGCCGGTACAGACATTGCCATTGAGGCTGCTGATATTGTCCTCATGAAAAGCAACTTGGAGGATGTCATAACTGCCATTGACCTTTCCAGAAAAACATTTTCCCGTATACGCCTCAATTACTTATGGGCTTTGGGTTATAACTTGCTTGGAATTCCAATTGCTGCTGGAGCTCTTTTCCCTTCTACAAGGTTCAGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCCTCTATCAGCGTCGTTTGCTGTTCTCTGTTGTTGAAATATTACAGGAGACCCAGGAAGCTAGACAACCTTGAGATACGAGGCATAAGCGTTGAGTCATCGAGTGATATGATACATCACGATTGATAGTTTTGCTTTAGCCAATTTTGCATACATGTCATTGTGTATATAAGTGTAGTGTTGTGATGATTTTAGTTTAGTATACAAAAGTGAAAATTGTTCTTCTCTTTCCTTGAAGACCTCACTCTTGCTCCTCTCCTGCACAATTAAGTTTACTAGTTTCTAAAATTTACAGATTTGTTGAAATGAAGTTGAGCTCAACATAAATGTGTACAGGGACTATCTTTTACATTTCATATGAATATTTCTCGT 3426 0.4717 GRVGCPHLVVSQSKAMAKLLALSCWRNLSPRPHYPSMPKYPKAKGQAAAVDELAESTALLSVVGMTCAACAGSVEKAIKRLPGIREAIVDVLNNRAHVIFYPSFVNEETIREAVEDAGFQAALLVDATRVHVDIQLCRIQIKGMTCTSCSSALESVLQALDGVLEAQVGLATEEAQVHYNPNLLTLDHILHAIQHAGFEAQLISSSQDLSKIDLHVEGAVSHEPSLELIQHSLRSLPGVLAVDITAELNKISVSYKPDVTGPRLLINAIQDTANGNLKANIYPTEEGQRNSHRRQETKQYYKSFLWSLVFTVPVFLTSMVFMYVPGIKDALDAKIVNMLTVGQVARWVLSTPVQFVLGWRFYYGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFEGSDFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLTPDTAVLLTLDGDGNVVGEEEIDSRLVQKDDVIKVVPGGKVASDGFVVWGQSHVNESMITGEALPVAKRKGDSVIGGTVNENGVLYVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVIVISFTTWLAWFLAGRFHVYAKSWIPSSMDSFELALQFGMSVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVDCIVFDKTGTLTVGKPVIVRTELLTKMVLQEFYELVAAVEVVISPISSKTLPHSFYLELLLQFNLSTALVLLKFMDYRCLHVINIAINLTCLSQVNSEHPLGKAIVEYAKKFRDEENPSWPEAQDFVSVTGHGVKATVHNKEIIVGNKSLLDDNSVAIPVVAEDMLAEAETMAQTGILVSINGKVAGVLAVSDPLKPGAQEVISILKSMKIKSIMVTGDNFGTASSIAREVGIESVIAEAKPDQKAEKVKDLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYLWALGYNLLGIPIAAGALFPSTRFRLPPWIAGAAMAASSISVVCCSLLLKYYRRPRKLDNLEIRGISVESSSDMIHHD 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00280 1059 ProSitePatterns Heavy-metal-associated domain. 62 91 IPR017969 GO:0046872
Pste1g00280 1059 SUPERFAMILY Calcium ATPase, transduction domain A 463 549 IPR008250 -
Pste1g00280 1059 PRINTS H+-transporting ATPase (proton pump) signature 921 937 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste1g00280 1059 PRINTS H+-transporting ATPase (proton pump) signature 952 977 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste1g00280 1059 CDD HMA 60 122 IPR006121 GO:0046872
Pste1g00280 1059 FunFam Copper-transporting ATPase 1, putative 431 553 - -
Pste1g00280 1059 NCBIfam copper ion binding protein 139 200 IPR006122 GO:0005507
Pste1g00280 1059 NCBIfam copper ion binding protein 60 121 IPR006122 GO:0005507
Pste1g00280 1059 Gene3D - 630 978 IPR023214 -
Pste1g00280 1059 FunFam Copper-transporting ATPase HMA5 134 205 - -
Pste1g00280 1059 PRINTS P-type cation-transporting ATPase superfamily signature 499 513 - -
Pste1g00280 1059 PRINTS P-type cation-transporting ATPase superfamily signature 921 940 - -
Pste1g00280 1059 PRINTS P-type cation-transporting ATPase superfamily signature 663 677 - -
Pste1g00280 1059 PRINTS P-type cation-transporting ATPase superfamily signature 944 956 - -
Pste1g00280 1059 PRINTS P-type cation-transporting ATPase superfamily signature 846 857 - -
Pste1g00280 1059 PRINTS P-type cation-transporting ATPase superfamily signature 868 878 - -
Pste1g00280 1059 SUPERFAMILY HMA, heavy metal-associated domain 134 205 IPR036163 GO:0046872
Pste1g00280 1059 ProSiteProfiles Heavy-metal-associated domain profile. 135 201 IPR006121 GO:0046872
Pste1g00280 1059 Pfam Heavy-metal-associated domain 139 199 IPR006121 GO:0046872
Pste1g00280 1059 Pfam Heavy-metal-associated domain 61 119 IPR006121 GO:0046872
Pste1g00280 1059 Pfam E1-E2 ATPase 444 641 - -
Pste1g00280 1059 Gene3D - 51 123 - -
Pste1g00280 1059 ProSiteProfiles Heavy-metal-associated domain profile. 56 122 IPR006121 GO:0046872
Pste1g00280 1059 SUPERFAMILY HMA, heavy metal-associated domain 57 123 IPR036163 GO:0046872
Pste1g00280 1059 CDD HMA 139 200 IPR006121 GO:0046872
Pste1g00280 1059 NCBIfam HAD-IC family P-type ATPase 416 682 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste1g00280 1059 NCBIfam HAD-IC family P-type ATPase 752 1003 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste1g00280 1059 ProSiteProfiles Heavy-metal-associated domain profile. 210 277 IPR006121 GO:0046872
Pste1g00280 1059 CDD P-type_ATPase_Cu-like 302 1031 - -
Pste1g00280 1059 SUPERFAMILY HAD-like 662 1027 IPR036412 -
Pste1g00280 1059 FunFam Probable copper-transporting ATPase HMA5 819 978 - -
Pste1g00280 1059 Pfam haloacid dehalogenase-like hydrolase 659 935 - -
Pste1g00280 1059 ProSitePatterns E1-E2 ATPases phosphorylation site. 665 671 IPR018303 -
Pste1g00280 1059 Gene3D - 745 852 IPR023299 GO:0000166
Pste1g00280 1059 Gene3D - 214 273 - -
Pste1g00280 1059 SUPERFAMILY Calcium ATPase, transmembrane domain M 408 998 IPR023298 -
Pste1g00280 1059 Gene3D - 135 207 - -
Pste1g00280 1059 SFLD C1.7: P-type atpase like 645 973 - -
Pste1g00280 1059 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 25 1046 - -
Pste1g00280 1059 FunFam Copper-transporting ATPase HMA5 55 126 - -
Pste1g00280 1059 Gene3D - 431 553 - -
Pste1g00280 1059 ProSitePatterns Heavy-metal-associated domain. 141 170 IPR017969 GO:0046872
Pste1g00280 1059 SFLD p-type atpase 645 973 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00280 Pste-Chr1 983509 988068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00280 18 1050 Primary Pumps ATPases AT1G63440 67.622 0.0 1412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00280 1 983509 988068 Pste1g00280 1 983509 988068 ECH