Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00276 AGTGAAGAGAGGGAGAATATGAATAGTTTTGTTCATGTCCCCCCCGGTTTTAGATTCCATCCTACGGATGAAGAACTTGTCGACTACTACCTTAGGAAGAAAGTTGCTTCAAGGAAGATTGACCTAGATGTGATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGTACAAATCGAGCAACTGCAGCGGGGTTCTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCCAAGCATGACCTGATAGGCATGAGGAAAACCTTACTGCAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAAGCATGCGTAAAGTGAGTGAGCAGGAGTCTCCGTGTTGGTATGATGAGCAAGTCAGTTTCATGGACTCACCAAAGCAAACCTCCCAATCTAATTTGGTGTATCAGCAGCTACCATATCCTTGCAAGAAAGAGCTAGATTTGCCATACCAATTGCCTCGCGACCACTTCCTCCAGCTTCCACTTTTAGAGAGCCCAAAACTGCTTCAATCTGCCATAACCCCTGATCAAATGCCATCATATGATCATGATCATGTAAGCCACTCCACTACTTTGCTTCCCACATCACTCATGCAAGAACAACAGCTTGTTCACCAAAACTTTCAGGCAACCTATGCCAACAACAGTTCCAATGCAGTGGATCATCTAACTGATTGGCGAGTGCTTGACAAATTCGTTGCCTCACAACTTAGTCAAGATGCATCCAAAGACAATACCTACTCCAACATCACAGTCAATATCTTTCACGCCACGGACACACATTTCGACAAACAAGAGATTGTGCTGCCTCAGGAAAATGCCTCAACATCAAACTCCACCTGTCCAATTCATTTGTGGAAATAA 969 0.4314 SEERENMNSFVHVPPGFRFHPTDEELVDYYLRKKVASRKIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLLQEEGWVVCRVFKKRVTSMRKVSEQESPCWYDEQVSFMDSPKQTSQSNLVYQQLPYPCKKELDLPYQLPRDHFLQLPLLESPKLLQSAITPDQMPSYDHDHVSHSTTLLPTSLMQEQQLVHQNFQATYANNSSNAVDHLTDWRVLDKFVASQLSQDASKDNTYSNITVNIFHATDTHFDKQEIVLPQENASTSNSTCPIHLWK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00276 322 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 121 - -
Pste1g00276 322 ProSiteProfiles NAC domain profile. 13 176 IPR003441 GO:0003677|GO:0006355
Pste1g00276 322 Gene3D NAC domain 22 124 IPR036093 GO:0003677|GO:0006355
Pste1g00276 322 SUPERFAMILY NAC domain 10 133 IPR036093 GO:0003677|GO:0006355
Pste1g00276 322 Pfam No apical meristem (NAM) protein 14 119 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00276 Pste-Chr1 962725 964357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00276 7 322 NAC Transcription Factor Family AT1G12260 46.961 5.81e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste1g00276 NAM 8.2e-28 No_clan