Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00275 CGGAACCACTTATGGCGCCTTCTTTAAATTATTATTATTGAATCCTAGGGTTTCACTCTCTCCTAACCCTCGACAATCGATTTCATCCAAATCGCTAGTGTTCCTTCGTCTCAATCCCTAAAGAAAACGACGACAATAATGGCGGTGTCTCTGACGGAGGGGGCGATAATGCAGATGTGTGGTGGCAGTTGCCCCGACGACTTGAAACCCGTGCTGCAGGTTATAGATTTGAAGCTTGTGCAGTCGCAGCAGCACAGCGCCACCGAGAGGTACCGTTTGGTTCTCTCCGATGGTTCCTTTTATCAGCAAGGGATGCTCGCCACTCAGAAGAACGACTTGGTTCGTGACGGAGCCTTGCAGAAAGGCTCCGTTGTTAGACTCACTCAGTTCATCTGCAACTCTGTCCAGAACCGCAAGATTATTATCATTGTTGACCTGGACGTTGTACACAACAAATGTGAACTGATCGGCGAACCTGCTGCAGCCCCAAAAGATCCATCTTCTGAATCTGCTGCTGGTCAATCAGGAGTAACCTCTGGGAATCCACAATCTTTAAATAGCAGTTCACACACGGGTGGCATGGCTTCTAGACCAAATGCGGCTGGGCAATCTCCAGTTCATCCAAAAGTGAATCCTCCTCCCAGTAATGTTTATTCTGGTATCTCTAACTCTGGAACCAGCTATGCTAGTAATGCTCCTCCTACTCATCCTAAAGTAGACCCCGGAGTCAGTTTACCTAGATCAGCACCTTTCAGTGGGTCTTATGGTGATCAGAATACAGGTTTCCACAATCCCCAATCTGAGGCTTCAAGACCCTTACAGAACTCTTATGCTCGTCCACCTCAGCCTATGTACCGGCAGCCATCTCCAATGTACATTAATAGAGGGCCAATTGGAAGAAATGATGCTCCCCCCAGGATAATTCCAATAGCAGCATTGAATCCATATCAGAATATGTGGACGATCAAAGCCAGGGTAACAGCTAAGGGAGAACTCAGGCATTATAACAATGCCCGAGGTGAAGGCAAGGTGTTTTCTTTCGATCTTTTGGATTCTGATGGTGGAGAAATTCGGGCAACTTGCTTCAATACTGTGGCTGATCAGTTCTATAATTTAATTGAAGCTGGTAAGGTATATCTAGTTTCCAGGGGAAGCATAAAGCCTGCTCAGAAGAATTTCAATCACCTTCACAATGATCAAGAGATAACCCTTGATATGACATCAACTATACAGCCATGCCATGATGATGATAACTCAATTCCAAAGCAGACATTTAATTTTCGCCCCATTAGTGAAATTGAAAGTGTGGAAAACAACACCATTTTGGATGTGATTGGTGTGGTGTGTTCTATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAACTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCTGGCAGAAGTGTTGAGTTAACTTTATGGGGAAATTTTTGTAATGGGGAAGGACAAGAGCTGCAAAATATTTGTGATGCTGGGAAATTTCCAGTTTTGGCTACAAAAGCTGTCAGAGTAAATGATTTCAATGGGAAGTCTATTGGGACTATAGCCATTAGCCAGCTATTTGTTGAGCCTGATTTTCCTGAGGCCTATACACTGAAAAGATGGTTTGAGAATGAAGGGAAGAATGTCCCAACTCACTCTATTTCTAGAGAAATATCTAATATTGGTAAGACTGATGTGTGTAAGACTATATCTCAAATTAAAGACGAGAAGTTAGGCACTTCTGAGAAGCCTGATTGGATATCTGTCAATGCAACTGTTTCATTCATTAAGTCTGAAAACTTCTGTTACCCAGGATGCCCCATCATGATAGGGGATAGACAATGTAACAAAAAAGTTACTAATAATGGAGATGGGAAATGGCATTGTGACAGGTGTAATCAATCTATTGATGCCTGTGACTATAGGTACATACTGTCTTTCCAGATAATGGATCACACTGGTGTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGTATACCTGCAAAAGATTTGTACTATCTGAAGTATGAAGAGCAAGATGATGAAAATTTTTCTAAAATCATCCAAAAGGTTCTCTTTGCTGACTATGTGTTCAAGTTAAAAGTAAAGGAAGAGACATTCAGTGATGAACAACGTGTTAAGTCAACGGTAGTAAAAGCAGACAAGGTAGACTATGTATCCAAATCTAGAGTTCGTTTGGATTTGATTCACAAACTCTTGACTGAGAAATCAGAAGGCACCACTCTTCCCAACAATACTGGACTGGGGAACCTTAAAACTGGACAAGTTATGCCTCCAGCTTATAATCCAATAAAGAGCAATACTAATACCAGTAGAGATTTTGGGATGCCTACAAGTCAAGCTGGTCAACATTATGGAAGCCAATATAGCAATTTTTCTGCAGCTGGTTCTCCTGGTTCGTATACATCATGCACTAACTGTGGAGGCTCTGGTCATAGCTCTGCCCATTGCCCAAATGTTAGAAATCTACCTGGACAATCTGCAGGAGGGGGCTTTACCAACACGTCATCTGTGGGGTCACGTGGTGGTGGTTCTGTCGAATGCTTTAAATGCCATCAAACTGGCCACTGGGCAAGAGACTGTCCTGGTTTGAGTGCAGTACCTCCATATGGAAGCACTAATGTAATGCAAGAGTCTTTCCCGATACCAGGTGGTGGTGGCTCTGGCGAATGCTTTAAGTGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTGTCAGTGCAGCACCTTCATCATATGGAAGCACTAATGTAATGCAGGGAAGATATGGAGTTGCTCAAAAGCAACAATTTGGGGGATATTGAAGTTTGGCATGAGCATTCTGAGTTTTATGGAGTTGTTTTTCATTTTGTTTCAGGTATGTCATGTCATGAATATATAGGCAATTTCGTTTTAGCAGTTAACTCTGTATATAGAGGACATAATTATGTTGTATTTTCTTGATGTACACACTGCGACGGGCGAACCATGTCTTTTACTTTCTATTATTTGTCACTTTCGCTGATGCAATTGGATACATAATAGATAATTTTAA 3089 0.4251 MAVSLTEGAIMQMCGGSCPDDLKPVLQVIDLKLVQSQQHSATERYRLVLSDGSFYQQGMLATQKNDLVRDGALQKGSVVRLTQFICNSVQNRKIIIIVDLDVVHNKCELIGEPAAAPKDPSSESAAGQSGVTSGNPQSLNSSSHTGGMASRPNAAGQSPVHPKVNPPPSNVYSGISNSGTSYASNAPPTHPKVDPGVSLPRSAPFSGSYGDQNTGFHNPQSEASRPLQNSYARPPQPMYRQPSPMYINRGPIGRNDAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGEGKVFSFDLLDSDGGEIRATCFNTVADQFYNLIEAGKVYLVSRGSIKPAQKNFNHLHNDQEITLDMTSTIQPCHDDDNSIPKQTFNFRPISEIESVENNTILDVIGVVCSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNGEGQELQNICDAGKFPVLATKAVRVNDFNGKSIGTIAISQLFVEPDFPEAYTLKRWFENEGKNVPTHSISREISNIGKTDVCKTISQIKDEKLGTSEKPDWISVNATVSFIKSENFCYPGCPIMIGDRQCNKKVTNNGDGKWHCDRCNQSIDACDYRYILSFQIMDHTGVTWVTAFQESGEEIMGIPAKDLYYLKYEEQDDENFSKIIQKVLFADYVFKLKVKEETFSDEQRVKSTVVKADKVDYVSKSRVRLDLIHKLLTEKSEGTTLPNNTGLGNLKTGQVMPPAYNPIKSNTNTSRDFGMPTSQAGQHYGSQYSNFSAAGSPGSYTSCTNCGGSGHSSAHCPNVRNLPGQSAGGGFTNTSSVGSRGGGSVECFKCHQTGHWARDCPGLSAVPPYGSTNVMQESFPIPGGGGSGECFKCHQPGHWARDCPGVSAAPSSYGSTNVMQGRYGVAQKQQFGGY 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00275 906 Gene3D - 372 513 IPR012340 -
Pste1g00275 906 FunFam Replication protein A subunit 373 511 - -
Pste1g00275 906 ProSiteProfiles Zinc finger CCHC-type profile. 862 876 IPR001878 GO:0003676|GO:0008270
Pste1g00275 906 MobiDBLite consensus disorder prediction 113 254 - -
Pste1g00275 906 MobiDBLite consensus disorder prediction 169 187 - -
Pste1g00275 906 Pfam Zinc knuckle 818 833 IPR001878 GO:0003676|GO:0008270
Pste1g00275 906 Pfam Zinc knuckle 861 876 IPR001878 GO:0003676|GO:0008270
Pste1g00275 906 SUPERFAMILY Nucleic acid-binding proteins 527 703 IPR012340 -
Pste1g00275 906 MobiDBLite consensus disorder prediction 205 236 - -
Pste1g00275 906 FunFam Replication protein A subunit 512 703 - -
Pste1g00275 906 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Pste1g00275 906 Gene3D - 4 116 IPR012340 -
Pste1g00275 906 MobiDBLite consensus disorder prediction 122 152 - -
Pste1g00275 906 Gene3D - 857 899 - -
Pste1g00275 906 Pfam OB-fold nucleic acid binding domain 274 351 IPR004365 GO:0003676
Pste1g00275 906 NCBIfam replication factor-a protein 1 (rpa1) 238 700 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pste1g00275 906 Gene3D - 514 703 IPR012340 -
Pste1g00275 906 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pste1g00275 906 PANTHER REPLICATION FACTOR A 1, RFA1 274 694 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pste1g00275 906 Gene3D - 260 370 IPR012340 -
Pste1g00275 906 CDD RPA1_DBD_A 263 366 - -
Pste1g00275 906 Pfam Replication protein A OB domain 384 487 IPR031657 -
Pste1g00275 906 CDD RPA1_DBD_B 395 502 - -
Pste1g00275 906 ProSiteProfiles Zinc finger CCHC-type profile. 819 833 IPR001878 GO:0003676|GO:0008270
Pste1g00275 906 SUPERFAMILY Retrovirus zinc finger-like domains 855 879 IPR036875 GO:0003676|GO:0008270
Pste1g00275 906 FunFam Replication protein A subunit 4 117 - -
Pste1g00275 906 Pfam Replication factor-A C terminal domain 545 694 IPR013955 -
Pste1g00275 906 SUPERFAMILY Nucleic acid-binding proteins 379 508 IPR012340 -
Pste1g00275 906 SUPERFAMILY Retrovirus zinc finger-like domains 808 836 IPR036875 GO:0003676|GO:0008270
Pste1g00275 906 SMART c2hcfinal6 774 790 IPR001878 GO:0003676|GO:0008270
Pste1g00275 906 SMART c2hcfinal6 861 877 IPR001878 GO:0003676|GO:0008270
Pste1g00275 906 SMART c2hcfinal6 818 834 IPR001878 GO:0003676|GO:0008270
Pste1g00275 906 ProSiteProfiles Zinc finger CCHC-type profile. 775 790 IPR001878 GO:0003676|GO:0008270
Pste1g00275 906 FunFam Replication protein A subunit 260 369 - -
Pste1g00275 906 SUPERFAMILY Nucleic acid-binding proteins 260 374 IPR012340 -
Pste1g00275 906 CDD RPA1_DBD_C 529 702 IPR047192 -
Pste1g00275 906 Gene3D - 771 839 - -
Pste1g00275 906 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00275 Pste-Chr1 956035 959766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00275 1 803 Core DNA Replication Machinery Family AT5G45400 50.814 0.0 840
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00275 1 956035 959766 Pste1g00275 1 956035 959766 ECH