LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g00262	CACATTTCACACACGCGCTTAGCCCACTTTAATTCAAATACACTTTTAATTTCCCCTTCTCTCTCCTCTCTTCTACCAAGTCCCAACTCCCAAGTGAAGTGAAGTCCCATTCTTTGTCTTTTCTTCCCCCCACACTGCATTCCCCTGTCAAAAACCCTAGATTTGAAAAATCTAGGGTTTTGTTTTCTTAACCTGTTACGGACATGATCCCCCAACTCACCTCTTCAATCTCACCCTCTGCTTTTTCTTCTCCATTTCCCTCCCTCACCTCTCCCATCACTTTTCAATGCCGATTCTTTTCCGCCTCTAAAATCACCTCCAACCTCGCCATTCTCCTCTCATCACCCATCTTTCTGCTCTTTCTAGGTTAACCAAACTCTTTTTCTTCCTTTCACTTTCCAAAATCTCCCACCTTCTTGTTACTTGAATCTTCACAGCTTCTGGGCTTTAGATCCTCTTCTTCCTTCTTTGCTTTAGGGTTAAAGATCTAATTTTTCCATCATTGTCAAAGCCATTTGCTTTTTACGAGTAAAAGGGTACTTAGCTATCAACCCCTGTTTTTGTATATTTTTTTAGAGTTTTGTACCAGTGAAAGGATTTGGAAGTTAAAAGAGTATCCTATCGCAATTGAGAAACCCGTTGGTAAATGCATGGATGGGAGAGAAGGCATGGCATTTCCCGGTGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGGGTTAGTGTGTCTGGTTCTGGAACTGGGACACAGAGTGGAGGGCCGCTTCAACCACCTTCTGGGTTTAGAGCTTTGTCCAATGTCTCTGCAGGTTCTACATTTAAAGCAGAGCCTCAGCCTCTGCGTGTTGGTTTCGGACATGGCATTAACATAGGTTCCTCTCCTGATAGTGGAGCTGGAGTACCTTCTTCTGGTGAGCCTGTGAAAAAGAAAAGAGGGAGGCCTAGGAAGTATGGCCCTGATGGATCTGTTTCCTTGATGCTCTCTCCCATGTCTGCCACTGCTAATTCCACCCCAGGATCAGGCACTCCTTCAGAGAAACGACCCAGAGGACGCCCTCCTGGAAGTGGAAGGAAGCAACAGCTTGCCACTCTAGGTGAATGGATGAACAGTTCTGCAGGACTGGCTTTTTCACCTCATGTTATTACTGTTGGAGCTGGGGAGGACATTGTAGCTAAGTTGTTGGCATTTTCACAGCAGAGACCAAGGGCTGTATGCATCTTGACAGGAACTGGGACAGTTTCTTCAGTCACTCTGCGCCAGCCAGCTTCTACTAGCGTCAGCGTTTCTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAGGAAGGTGGACCTCGCAATAATAGAACAGGGGGCATGAGTGTTTCCCTCTCTAGTCCTGATGGTCATATTATTGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCCCAGTACAGGTGGTAGTATGCAGTTTTGTATATGGGGGTTCTAAGCCAAAGACTAAACAAGTGACTGCAGCTGCTACTACCACTAAAGATAGCAGTTCAGAGCCTCAGGGTAGCGATAAGTTGGCTTCTCCAGGCAGTGCTCCACCTAATCAAAACTACACCTCATCTTCTCCAGCCCCAGGCATTTGGCCTGCATCATCAAGGCCAGTAGAGGTGAAAAGTGCACATCCACACACAGGTATAGACTTGACGCGTGGGTGAAGAACATTTGTTATTCTACAAGAGACGTTGTTAGTTTTCTATAGATATATCTCTTGTTGTAAATGAACCGAATTTGTGAGCATTGTGACTCTTGCTATCCCCGTTAATGGGTGACAAGTTCGCGCTAACCAATGAAGGGGCTAAGTAACAGTCTTGACTTATGCAAAATGTGTTTGGTGAAATGAATGCATAAAGTCAAGATTAAGTGGCAATTATGAAATCTTAATTTTAGTCTCGTCCCTCAATCACACACCTTTTCTATTACGAATCTAACATGTCGGCAACAGTATTTGAAAATGATTTTATCAGTATAAAATCATTAGTTAATGGCGGTGGCATAAAAGATTCTTGTGGAAGGTTCAGTTGAAGGTACTGTTGCTCTACTTAGTCGAGGCAACGTATCTAGGCCTGAGCTAGGAACCG	2132	0.4461	MDGREGMAFPGGSAPYYMQHRGGVSVSGSGTGTQSGGPLQPPSGFRALSNVSAGSTFKAEPQPLRVGFGHGINIGSSPDSGAGVPSSGEPVKKKRGRPRKYGPDGSVSLMLSPMSATANSTPGSGTPSEKRPRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVITVGAGEDIVAKLLAFSQQRPRAVCILTGTGTVSSVTLRQPASTSVSVSYEGRFQILCLSGSYLVAEEGGPRNNRTGGMSVSLSSPDGHIIGGGVARLIAASPVQVVVCSFVYGGSKPKTKQVTAAATTTKDSSSEPQGSDKLASPGSAPPNQNYTSSSPAPGIWPASSRPVEVKSAHPHTGIDLTRG	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g00262	352	Pfam	Plants and Prokaryotes Conserved (PCC) domain	162	276	IPR005175	-
	Pste1g00262	352	CDD	DUF296	162	275	IPR005175	-
	Pste1g00262	352	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	64	318	IPR039605	GO:0003680
	Pste1g00262	352	MobiDBLite	consensus disorder prediction	1	143	-	-
	Pste1g00262	352	ProSiteProfiles	PPC domain profile profile.	154	296	IPR005175	-
	Pste1g00262	352	MobiDBLite	consensus disorder prediction	284	352	-	-
	Pste1g00262	352	MobiDBLite	consensus disorder prediction	110	127	-	-
	Pste1g00262	352	MobiDBLite	consensus disorder prediction	24	57	-	-
	Pste1g00262	352	MobiDBLite	consensus disorder prediction	285	328	-	-
	Pste1g00262	352	PRINTS	AT-hook-like domain signature	92	102	IPR017956	GO:0003677
	Pste1g00262	352	PRINTS	AT-hook-like domain signature	128	139	IPR017956	GO:0003677
	Pste1g00262	352	SUPERFAMILY	AF0104/ALDC/Ptd012-like	159	277	-	-
	Pste1g00262	352	Gene3D	-	162	292	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g00262	Pste-Chr1	925983	930128	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g00262	1	352	AT-hook Motif Nuclear Localized (AHL) Family	AT1G63470	50.785	1.95e-99	297