Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00247 GGCGTGTTTCTTACGTATAAATTTTCCACAGCTACCAATATTGTTTTTATCTCTCATTTTACTTGCATTTTGGCCTATATACATACGCCTGTTTTTCTCCTTCTACTCAACTCACTATGTTTTACCTCACACATGCCTGCCTTTGCTTTTCAAAATGATCATTTGGCACTATTAAAATTCAAGCAATCCATATCCATGGATCCATATGGAATTTTGCTTTCTTGGAATGCTTCTACTCCCTTTTGTAATTGGCATGGAATCACATGCAATCCTATAGTCCAAAGAGTTACGGAACTTAACTTGAAAGAATACAAGCAATCTCTCATATCTCATAAACTTCAACCTCAAAACAATAACTTCTACGGAGAAATTCCACAAGAATTAGGACGGTTGTCACGATTACTGAGACACTCTGGAGAAATTCCTACGAACTTGACAGGTTGTACTGATATCAAAATCTTATACTTAAGTGGAAACAAATTGATGGGCAAAATACCAATCGAAATTGGCTCATTACGAAAGCTTACACATTTAAGCTTTTCCATGAACCAATTAACTGGAGGAATCCCATCGTTCATAGGGAATCTCTCATCCCTTATTTTTCTCTCTGTGGATACTAATAACTTAGAGGGAGATATTCCACAAGAAATATGTTATCTGAAAAGCTTGAAAACGATAGCAATGGGTGTTAACAAGTTGACAGGAACATTTCCTTCTTGTCTTTATAATATGTCATCTATTGCTATAATCTCAGCTACAGAAAATCAATTTAATGGAACTCTTCCACCTAACATGTTCCACACCCTCCCAAATCTCAAATTACAACCATTTCACGGACAAGTTCCAAGTCTAGGGAAGCTAAAAGATCTTTATACCCTATCTTTGTCCAAGAACAATCTAGGTTACAATTCAACTAATGATTTGGAGTTTTTAAAATCATTAGCAAATTGTAGTAAGTTGCAACACTTAGCTATATCCTACAACAACTTTGGAGGTTATTTGCCAAATTCTTTGGGCAATTTATCCACCCAACTTAGTAAACTATATCTTGGAGGTAATCAAATATTAGGAGAAATTCCCACAACAATGGGGAATTTAATTGGCTTAACTCTTCTGAATATGGAACATAATCACATTGATGGAGTTATTCCTACAACTTTTGGGAAGTTTCAAAAGATGCAATTGTTAGCCTTACCAGGAAATAAGTTGTCAGGAGATATTGGAACCTTTATAGGTAACCTTAGCCAATTGTTTTATTTGAATATGGGTGAAAATATATTAGAAGGAAATATTTCAACAAGTATAGGAAATTGCCAAAAGTTACAATACCTAGGTCTTTCGCAAAACCACCTTAAAGGAGCCATACCTAAAGAGATTTTTAACCTTTTCTTATTATTACAAGTTGATTTGTCGCATAACTCATTGAATGATATGTCTAAGAATCACTGTCTGTTACATTCTGGAACCATTATGGGATGCATAATGTTGGAATTCCTTTATTTGCAAGGGAATTCTTTACAAGGAATCATACCATCCTCTTTAGGATCAATTCCTAATGTGCTACAAAACATTTCTTTCTTGCAATATTTAAATGTATCTTTTAACATGCTGGAGGGTGAGGTACCAACTGAAGGTGTTTTTAGAAATGCAAGTGGGTTAGTGGTCATGGGAAGCAGTAAACTTTGTGGAGGTATTTCAAACTTGCATCTACCACCATGTCCTATCAAAGGTAACAAACCTGCGAAACACCATAAGTTCATGTTGATAGTAGTAGTAGTTAGTGTGATTACTTTTCTTCTCATATTGTCAATTATTCTAACTATCTACTGGTTGAGGAAAAAAAGTAAGAAACTGTCATTGGATTCATCAACAATTGACCAACTGGCTAAAGTTTCATACCAAAGCCTACACAATGGAACTAATGGGTTCTCAACTACAAACTTAATAGGGTTTGGAAATTTTAGCTCTGTATACAAAGGAACTCTTGAGTTAGAAGACAAAGTTGTTGCTATAAAGGTCTTCAACCTTAAAAAAAAGGGAGCTCATAAGAGTTTCATTGTCGAATGCAATGCATTGAAAAATATTAAACATCGAAATCTAGTTCAGATTTTAACATGTTGTTCTAGCACAAACTACAAAGGTCAAGAATTTAAAGCTCTAATTTTTGAGTACATGGGAAATGGAAGTTTAGAGGAATGGTTGCATCCTGTGACACTAAATGCAGAACACGAGATGAAATTCAACCTTAATCAAAGATTAAACATCATGATTGATGTTGCTTCTGCAATTCATTATCTTCATCATGAATGTGAGGAAGTGATCATTCATTGTGATTTAAAGCCAAGCAATGTGCTTCTTGATGATGACATGATTGCTCATGTAAGTGATTTTGGCATAGCAAGGCTTCTCTCAACCATTAATGGTATTGCGTCTAAGCAAGCAAGTTCAATCGGAATAAAAGGGACTGTTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTGAGGTGTCTATGAATGGTGACATGTACAATTTTGGGATTCTTATGTTAGAGATGCTTACTGGAAGAAGACCTACAGATGAAATCTTTGAACAAGGTCAAAATTTGCATAACTTTGTAGAGAATTCATTTCCATATAATCTTTTACAAATTTTGGACCCATCACTTGTACCGAAACAAGGAAAAGGAACTACGGAAGATGATATCACTCAAAATTTTACTTTGACCGATGAAAAGTGCTTAGTTTCACTTTTTAAAATTGGACTTGCTTGTTCATTGGAATCATCAAAAGAAAGAATGAATATCGTGGATGTCACAAGAGAGCTAAGCAAAATTAGAAAAGTTTTTCTTGGTAGTAAGACTTCCAAAACTACACAGGAGGTTTTGCAGCCTGATTATGGAAGTGTCTGTGTTTACCTTTACTTCAGGGATTGTAACAGAGATCATGAATTAGAGCCT 2958 0.3499 GVFLTYKFSTATNIVFISHFTCILAYIHTPVFLLLLNSLCFTSHMPAFAFQNDHLALLKFKQSISMDPYGILLSWNASTPFCNWHGITCNPIVQRVTELNLKEYKQSLISHKLQPQNNNFYGEIPQELGRLSRLLRHSGEIPTNLTGCTDIKILYLSGNKLMGKIPIEIGSLRKLTHLSFSMNQLTGGIPSFIGNLSSLIFLSVDTNNLEGDIPQEICYLKSLKTIAMGVNKLTGTFPSCLYNMSSIAIISATENQFNGTLPPNMFHTLPNLKLQPFHGQVPSLGKLKDLYTLSLSKNNLGYNSTNDLEFLKSLANCSKLQHLAISYNNFGGYLPNSLGNLSTQLSKLYLGGNQILGEIPTTMGNLIGLTLLNMEHNHIDGVIPTTFGKFQKMQLLALPGNKLSGDIGTFIGNLSQLFYLNMGENILEGNISTSIGNCQKLQYLGLSQNHLKGAIPKEIFNLFLLLQVDLSHNSLNDMSKNHCLLHSGTIMGCIMLEFLYLQGNSLQGIIPSSLGSIPNVLQNISFLQYLNVSFNMLEGEVPTEGVFRNASGLVVMGSSKLCGGISNLHLPPCPIKGNKPAKHHKFMLIVVVVSVITFLLILSIILTIYWLRKKSKKLSLDSSTIDQLAKVSYQSLHNGTNGFSTTNLIGFGNFSSVYKGTLELEDKVVAIKVFNLKKKGAHKSFIVECNALKNIKHRNLVQILTCCSSTNYKGQEFKALIFEYMGNGSLEEWLHPVTLNAEHEMKFNLNQRLNIMIDVASAIHYLHHECEEVIIHCDLKPSNVLLDDDMIAHVSDFGIARLLSTINGIASKQASSIGIKGTVGYAPPEYGMGSEVSMNGDMYNFGILMLEMLTGRRPTDEIFEQGQNLHNFVENSFPYNLLQILDPSLVPKQGKGTTEDDITQNFTLTDEKCLVSLFKIGLACSLESSKERMNIVDVTRELSKIRKVFLGSKTSKTTQEVLQPDYGSVCVYLYFRDCNRDHELEP 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00247 986 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 725 955 - -
Pste1g00247 986 ProSitePatterns Protein kinases ATP-binding region signature. 649 672 IPR017441 GO:0005524
Pste1g00247 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672|GO:0006468
Pste1g00247 986 ProSiteProfiles Protein kinase domain profile. 643 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g00247 986 SUPERFAMILY L domain-like 50 300 - -
Pste1g00247 986 FunFam LRR receptor-like serine/threonine-protein kinase EFR 614 724 - -
Pste1g00247 986 Pfam Leucine rich repeat 344 403 IPR001611 GO:0005515
Pste1g00247 986 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 316 517 - -
Pste1g00247 986 Gene3D Transferase(Phosphotransferase) domain 1 725 963 - -
Pste1g00247 986 Pfam Leucine rich repeat N-terminal domain 52 90 IPR013210 -
Pste1g00247 986 PANTHER OS04G0122200 PROTEIN 118 217 - -
Pste1g00247 986 Gene3D Ribonuclease Inhibitor 113 306 IPR032675 -
Pste1g00247 986 Gene3D Ribonuclease Inhibitor 48 112 IPR032675 -
Pste1g00247 986 Gene3D Phosphorylase Kinase; domain 1 623 724 - -
Pste1g00247 986 Gene3D Ribonuclease Inhibitor 307 574 IPR032675 -
Pste1g00247 986 SUPERFAMILY L domain-like 284 562 - -
Pste1g00247 986 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 100 315 - -
Pste1g00247 986 Pfam Protein kinase domain 645 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g00247 986 SUPERFAMILY Protein kinase-like (PK-like) 617 942 IPR011009 -
Pste1g00247 986 SMART serkin_6 643 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00247 Pste-Chr1 872535 878220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00247 47 958 Receptor kinase-like Gene Family AT3G47570 40.737 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pste1g00247 Pkinase 1.8e-39 CL0016