Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00222 CAGCTGTAACAGCGGTTGACCTCACACCACCCACTACTGTTCTGTTTCTTTCTATTTGTTGTTTTTTCCTCAAACAGGACAAAACAAACATTGGGTAACTGCAATGCAATGCAACTTTGATCAAATGCTGATAAAATTCAAGGGTCCCTTAGATCTTCTTTGAGATCACTGTTGCGTCTCTCACCTTTGCTCCAACCCCACGTTGCTTTGGGTGGAGGGAGATGATTGATGGAGTCCTGTGAGCATGGGAACGTGCCAGTTAGAGAGTTCCATGCGAATGGAAGCCGCATGGTTGCATCAGAAGTTGAGGCTAAGCTTGATCAAGGAAATATTCAAGAGGCAGAAGATGCATTGCGAGAAGGGTTGTCGCTCAATTTTGAGGAAGCAAGAGCTCTTCTAGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCAGCCATACAGCGATTGCAGCCTTCTTTGTCTGAGAAACCACCAGTCAAGAAAGGTCGCACTCGGAATGAATCACCCTCCTCAGTCTCTCAGCATGCTGCTAGTTTGGTGTTTGAAGCCATCTACTTAAAAGCCAAGTCTCTGCAAAAACTGGGGAGGTTTTCTGAGGCTGCTAATGATTGTAAAAGTATTCTTGATGCTGTTGAGAAGATATTTTATCTGGGTATTCCTGATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTATGGAAACAAGCTGGTTGCTATAATGAGGCAGTCTCTGCTTATAGGCGTGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGTTGTGCAAGAATTCAGAAGTCATTTGTTGTTTTTTTGCTATACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCTGTTCAGATTGATGGATCATATGTGCCCAAAAATAATCTTGAAGAGGCTATTCTGCTACTGATGATTCTTTTGAAAAAAAATTTCCTTGGTAAGATGAAATGGGATCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTATATGTAGCCAAACTTCGATTTTAGCAAAGCAACTTGAAGCATTGATGCCTGGAGTATACCATCGAATTGATTGTTGGAATTCTTTAGCTTTATGTTATAGTGCAGCTGGACAAAATGACTGTGCTTTGAATGTCCTAAGGAAGTCTTTGCACAAACATGAACGACCAGATGACCTTACATCATTGTTGTTAGCAGCCAGGATCTGCAGTGAGGATCCCCATCTTGCTGCTGAGGGAGTGAACCATGCACAGAAGGCAATCAATAATGCTCATGGCCCAAATGAGCACTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTGGGAAAGCAAGCTAAGGTTTCTTCCTCTGACTTTGAGAGGTCTCACCTTCAGTCCAAAGCTCTGGAATCATTGGTGGCAGCAATTAGATTGGAACAAAACAATTCAGATCTGATTTTTGAATTGGCTGTTCAGTATGCAGAGCACCGAAATTTGCCTGCTGCTTTGCGCTCTGCAAGGCATTTCTTTAATAAAACAGGTGGTTCTGCATTGAAAGCTTGGAGATTGCTTGCTCTAATTTTGTCTGCACAACAAAGATATTCAGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGTGCCACTGCTTAGGCTGAAAACAAAGTTGAAAATCTCCCAATCACAACCCATGGATGCTATTGAAACTTACAGGTCCCTTCTTGCTTTGGTTCAAGCCCAAAAAAAATCCTTTGGGTCTCTCCAAATTAGTTCAAAGGTTGAGGATGATAAATTAAATGAATTTGACATTTGGCATGGTCTGGCAAATTTATATGCTAGTATTTTATTTGAAGGACGTGGGCAAAATGAGGAAGCTCTTCGTGCTGCTATTAATGCCGTACTAGTTGAACCAAACTATGTTCCATGCAAGATCATGATGGGTGCTTTGATTCAAAAAATGGGTCCAAAGTATATGGCTGCCGCAAGAAGCTCAATGACTGATGCACTCCGAATAGAACCCACCAACTGCAGGGCTTGGTATTACTTGGGATTGCTTAACAAGCAAGACGGCCGAATCAGTGATGCCGCAGACTGCTTCCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAAAGTTTCAGCTCTATAACTTGACAGGATTCAATTCCTAAACAGTTAACTCTGCAGCCAGCAGTGAGATTTATCTCAATTATGTTTTCTGTTGATATATCTTCTGGGTTCAATGGGACACATAGAAAGAGTTTTAGGAAATATATTCCTCTTTTTACTATTATTTTAACTGTTATCATCACAATTCACTATCTAGGCTGAAAGGAAAAGAATTAAAACATTATATAGTAAATAAGATAAGAAAGGGATTGATGTTAAACTGGTTGTCGGAAGGATGAATTGTAAAGAACTTGGACTAGCAGAGATATTAACGTTGTTCTACTGCTGCTCAGCCTTGTAAATGTCTTTCGAGCAGTATCATTGTAAAGAGAGTAGAGATTCTGTTTTCTTCTTTTACGTGCTTAGTTCGATAGCTAGATCTACAAGGTATAAAGAAAAATGTTAGGAGTCACTTGAATGCAAATGCAGCCACTTGTACTATGATGTACTGTACATTTCTGTAATTTTTTTTAACTTCGATGTTTTATTATATGTATCTCTGTTAAGCTCTAAATACTTTCCCC 2765 0.4083 MESCEHGNVPVREFHANGSRMVASEVEAKLDQGNIQEAEDALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLSEKPPVKKGRTRNESPSSVSQHAASLVFEAIYLKAKSLQKLGRFSEAANDCKSILDAVEKIFYLGIPDIQVDNKLQEIVSHAVELLPELWKQAGCYNEAVSAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILLKKNFLGKMKWDPSVMEHLTFALSICSQTSILAKQLEALMPGVYHRIDCWNSLALCYSAAGQNDCALNVLRKSLHKHERPDDLTSLLLAARICSEDPHLAAEGVNHAQKAINNAHGPNEHLKGVALRMLGLCLGKQAKVSSSDFERSHLQSKALESLVAAIRLEQNNSDLIFELAVQYAEHRNLPAALRSARHFFNKTGGSALKAWRLLALILSAQQRYSEAEVVTDAALDQTARWEQVPLLRLKTKLKISQSQPMDAIETYRSLLALVQAQKKSFGSLQISSKVEDDKLNEFDIWHGLANLYASILFEGRGQNEEALRAAINAVLVEPNYVPCKIMMGALIQKMGPKYMAAARSSMTDALRIEPTNCRAWYYLGLLNKQDGRISDAADCFQAASMLEESDPIESFSSIT 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00222 665 SUPERFAMILY TPR-like 460 649 IPR011990 GO:0005515
Pste1g00222 665 SUPERFAMILY TPR-like 118 443 IPR011990 GO:0005515
Pste1g00222 665 Pfam Tetratricopeptide repeat 28 75 - -
Pste1g00222 665 Gene3D Tetratricopeptide repeat domain 23 214 IPR011990 GO:0005515
Pste1g00222 665 Gene3D Tetratricopeptide repeat domain 464 662 IPR011990 GO:0005515
Pste1g00222 665 SMART tpr_5 623 656 IPR019734 GO:0005515
Pste1g00222 665 SMART tpr_5 458 491 IPR019734 GO:0005515
Pste1g00222 665 SMART tpr_5 302 335 IPR019734 GO:0005515
Pste1g00222 665 SMART tpr_5 118 151 IPR019734 GO:0005515
Pste1g00222 665 SUPERFAMILY TPR-like 27 358 IPR011990 GO:0005515
Pste1g00222 665 Gene3D Tetratricopeptide repeat domain 237 457 IPR011990 GO:0005515
Pste1g00222 665 PANTHER PROTEIN NPG1 8 560 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00222 Pste-Chr1 779289 786053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00222 11 664 Calmodulin-binding Proteins AT2G43040 68.705 0.0 912