Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00199 ATGGTGGTCAACGAGAGACCCTCCAAGAGGATGAAGAGGAGGGTCACCGCTGATCTTCAAGATTTTCTCACTTTTCCTGTCCCTGCCCCTGCCCCGCCGTCGCCGTCGCCACCTCACTCCAACCCTTCCGGACCTATCTTGTTTCGTGTCGGAGACCTTCTCCACGGCCCCGATCTCTCCCCGCCTATTGTCACTCTCGACATTGTCGAGGAGGACGTCACTCGTTCTCGCACTTCGGTCTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGCGGACATCCGGTGTGTAGAAAGCGATACCATTTCATAATAAGGGCTGCAACTAATGCCATAGAAGCGTATCAAAGACCTTGTTCAAGATGTGGTAATCTTCTCCAATTGTCTGAAACAAGATGTAGATCGTGTAACTTTGCCATCACCGTTGATGACCTTGAAGATTGGGTTTATCATCAGATTGAAGATAACACCCATCTTCTGCACGGTGTTGTCCATGCCAATGGTTATGGTCATCTGCTTACTCTTAATGGAAGAGAAGGTGGCTCGAAGCTTCTCTCTGGATCTGATATCATGGGTTTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGAAGGTTAGCGTGATGGATTTGTCTAAGAAATTTGGGCTGGAATACCGATTGCTTCATGCAATCACCAACGGGCATTCCTGGTATGGCAATTGGGGTTATGAATTTGGAACTGGCAGCTATGCCCTTACCCAAGATGCATATAAGAGTGCAGTGAATACCCTCTCAAGCATGTCTTTGTCGTCATTTTCATTCCATGGTCGGGGACCACGAAGCCGCCTGGAGTGTGTCATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTGTAACTATTAAAGATCTATTCTCCTTTATGTTGACATTGGTTCATGAATGTCGTAAGCCAATGACCATGAGGACATCTAAGCAGACCAGTAATTTATTATGTGCTTGGACCGGAAATGATGTTGAAGAGGTGCAACATGCTTTGATCAAGGTATTGCTTGCATCGGGTGCCCGTGGTGAGGCCAAATGGGTGACAAGGCGGGCTCTGAAAGGTACAGTTTGCAGGGGTGTTTCATCTCCAGAGCTTCTAGATTACTGCCTTAAGCATTTGCCAGGGAAATTAGCTGCCAATGGATTGGTTATCTGTTCGCGATGCAATCCCATTTCCAGTGCAATCGAATTCAGGTTGGAACCTTGGTGTAATGGATTAAGGACAAATTCAAGCTATCCAACAGAAGTACAACTAATATCTGATTTGACATTCTTATTTGATTCAATTATTCACCCAGACAAAATGGTGTGCTACAGACCTAGGATTATGAGGAAAAGGGTGGCTGATTCAGCCAGGAAGCTTCTTGACTGCAAGCAGTTTATGAAGGATTATAAGCAATATGAAATGGCAGTTGAACTGCCTTCAGTCCTTAGGCTGTGGTGTCATGTGGAGCTTTCTGATCAGTCTAAGGATGATCCGTCCCCACCGCCTGAGCTAATTGTGTTACCTTTGAATGCTACAGTTGCCCACCTCAAGAGTGAAGCCACTAGTGCTTTTCAAGAAGTGTATGCAATGTATAAAAGGTTTCAAGCTGAGGAGCTCCTAGGATATGGGTCAATTAGTGATTCGCTCACCATCAAGTTCTTGCTTGGAACATGTGGAACAGTCCAAATTCAAGGTAAATGCCCAGCCAAACATGGGCTAAGCCGATTCCGAATGGAACGAGGAACAGAGGCGTGGAAGGTGGATTGCACTTGTGGAGCTAAGGATGATGATGGGGAGAAAATGTTAGCGTGTGATACCTGTGGCGTTTGGCAGCATACTAGATGCGCTGGAATTGATAATTCTGATGGCATGCCTTCTAAGTTTGTGTGTATGACATGTGTCAACTCGTACCGTGAGGAAACTAAAAAGTTACCAGCATCTGGCGAGGAGGCTAACGAAACCTGTAAATTCAACACATCTTGCAGAGATGAGGCAGTAGCAAGGGACTGCGCAACAGTTTCATGTAACATAGCTGTGAATTTTGGTGTACGTTGA 2064 0.4598 MVVNERPSKRMKRRVTADLQDFLTFPVPAPAPPSPSPPHSNPSGPILFRVGDLLHGPDLSPPIVTLDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAATNAIEAYQRPCSRCGNLLQLSETRCRSCNFAITVDDLEDWVYHQIEDNTHLLHGVVHANGYGHLLTLNGREGGSKLLSGSDIMGFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAITNGHSWYGNWGYEFGTGSYALTQDAYKSAVNTLSSMSLSSFSFHGRGPRSRLECVISLYQSLAETELVTIKDLFSFMLTLVHECRKPMTMRTSKQTSNLLCAWTGNDVEEVQHALIKVLLASGARGEAKWVTRRALKGTVCRGVSSPELLDYCLKHLPGKLAANGLVICSRCNPISSAIEFRLEPWCNGLRTNSSYPTEVQLISDLTFLFDSIIHPDKMVCYRPRIMRKRVADSARKLLDCKQFMKDYKQYEMAVELPSVLRLWCHVELSDQSKDDPSPPPELIVLPLNATVAHLKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTIKFLLGTCGTVQIQGKCPAKHGLSRFRMERGTEAWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSDGMPSKFVCMTCVNSYREETKKLPASGEEANETCKFNTSCRDEAVARDCATVSCNIAVNFGVR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00199 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 577 643 IPR013083 -
Pste1g00199 687 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 61 650 - -
Pste1g00199 687 SMART PHD_3 591 637 IPR001965 -
Pste1g00199 687 ProSitePatterns Zinc finger PHD-type signature. 592 636 IPR019786 -
Pste1g00199 687 Pfam PHD-finger 592 638 IPR019787 -
Pste1g00199 687 SUPERFAMILY FYVE/PHD zinc finger 581 639 IPR011011 -
Pste1g00199 687 ProSitePatterns Uncharacterized protein family UPF0054 signature. 160 170 IPR020549 -
Pste1g00199 687 CDD PHD_MMD1_like 591 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00199 Pste-Chr1 725683 728542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00199 60 636 PHD Transcription Factor Family AT5G22260 28.176 4.23e-85 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste1g00199 PHD 3.3e-09 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00199 1 725683 728542 Pste1g00199 1 725683 728542 ECH