Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00195 ATGCTTGCAACAAAGGTTCTTCAAATAAAGAAGATGAGTTCATCAAATGGTGGAGTGCCGCCGGGATTTAGATTTCATCCAACGGATGAAGAGCTTCTTCATTACTACTTGAAAAAGAAGGTCTCATTTCAGAAGTTTGACATGGATGTTATTCGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGAAAGATGTAGAATAGGATCAACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAATACCCTACCGGTTCAAGGACTAATAGAGCAACAAATGCAGGGTTTTGGAAAGCAACAGGAAGAGATAAATGCATTAGGAATAGTTATAAGAAGATTGGAATGCGAAAAACCCTTGTGTTTTACAAAGGAAGAGCTCCTCATGGACAAAAAACTGATTGGATTATGCATGAGTATCGCCTAGAAGATGGCAATGATCCTCAAGGAAGTGCCAATGAAGATGGTTGGGTGGTGTGTAGAGTGTTCAAGAAGAAGAATTTATTCAAGATTGGAAGTGAAGGTGGCTCTACACACAATCCAGATCAACAAATCAACAATTCCTCAAGCACTAATGTTCGCTCTTTCATACATAGAGAAAATCATTACTTACTACATCAACAACAAAATCCTAGGAGCTCATTAGGGCTTGAGCTTGATAAGCCTGAGCTTGCTCTCCATTACCCACACTTACAAAACCCTCAATACCCACTCTTCCAATCTCAACCTCTCCTTCAAAACCAAAAACATATGGTTTATGATTATTCATATACATCATCTATACCATCAGACACCCCTATCATGGCAAAGCAACTCATGACAAACCCTAGAGACTGCAAGAGTGGTAGTGACGGTCTAAGATATCAAGTTTCAGAGTCTGGTATGGAAGTTGGGTCATGTGAACCAAATCAAGAAATGGGTGTAGGAAGAGGTGAAGGAAGAAACGAATGGAGTCCCCTTGATAGGCTAGTGACCCCTCATATTGTAAATGAAGACTCAACCAAAGGTGTTAGGTTTGAGGAGCCAAATCCACAATCTGTCCACCAGATTAACCAACTTTCATTACGGGGAGAAACAAACTTCTGGGCCTATGGAAAACAATGA 1119 0.4057 MLATKVLQIKKMSSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPQGSANEDGWVVCRVFKKKNLFKIGSEGGSTHNPDQQINNSSSTNVRSFIHRENHYLLHQQQNPRSSLGLELDKPELALHYPHLQNPQYPLFQSQPLLQNQKHMVYDYSYTSSIPSDTPIMAKQLMTNPRDCKSGSDGLRYQVSESGMEVGSCEPNQEMGVGRGEGRNEWSPLDRLVTPHIVNEDSTKGVRFEEPNPQSVHQINQLSLRGETNFWAYGKQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00195 372 FunFam NAC domain-containing protein 28 174 - -
Pste1g00195 372 Pfam No apical meristem (NAM) protein 20 147 IPR003441 GO:0003677|GO:0006355
Pste1g00195 372 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
Pste1g00195 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 234 - -
Pste1g00195 372 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Pste1g00195 372 MobiDBLite consensus disorder prediction 298 323 - -
Pste1g00195 372 SUPERFAMILY NAC domain 16 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00195 Pste-Chr1 712851 715819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00195 12 366 NAC Transcription Factor Family AT1G33280 54.972 1.51e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste1g00195 NAM 3.1e-37 No_clan