Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00192 ATGTTTCTGCATTCTTCAGCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACAGCTGGATCTCTAAGACCTATTGTACACGGTCAAACTCTGAAATACAACATGAAAGTGAGAGCTGGCAGAGGATTTTCTCTTGAAGAACTTAAAGCTGCAGGCATTCCCAAAAAGCTTGCTCCGACCATTGGCATTGCTGTTGATCATCGTCGCAAGAATCGATCTTTGGAAAGTCTGCAAGCTAATGTACAGAGACTGAAGACATACAAGGCCAAATTGGTCGTGTTCCCAAGACGGGCACGCAAGGTCAAGGCTGGTGACTCTACTCCTGAGGAACTTGCAAATGCAACCCAAGTCCAGGGTTCATACTTGCCAATTGTCAGGGAGAAGCCATCTGTTGAACTAGTAAAGGTTACAGATGACATGAAGGCATTTAAAGCTTATTACAAACTTCGACTTGAACGCACAAACAAGCGCCATTATGGTGCCAGACTGAAGAAGGCCGCTGAAGCTGAAAAGGAAGACAAAAAGTGATGACATTTAGAATTCCCAAGTTTGTAGTCCATCCACATAATAGTTGTTTCAAGACAATTTTGGCTCGAGATTAGCTTTATTAAGAACATGTTCACTCTAAAACATGGATCACTTCACCTATTTTTATTTTGTGAACTGTTATTCAAGTTTGTTGGTTTAACTAGCACTTTGATTTGTCTGGAGATTTGTCAGTATTTGTTTTTGTTCAGGCTGTTCTCTAATCGCTGGCTTGGGTTATTAACTTCTTGTGATTGATTAATTATAGTGGGTTCCGTAC 811 0.4118 MFLHSSARQKKAVKIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVREKPSVELVKVTDDMKAFKAYYKLRLERTNKRHYGARLKKAAEAEKEDKK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00192 177 Hamap 50S ribosomal protein L13e [rpl13e]. 15 98 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pste1g00192 177 PANTHER 60S RIBOSOMAL PROTEIN L13 6 177 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pste1g00192 177 ProSitePatterns Ribosomal protein L13e signature. 40 54 IPR018256 GO:0003735|GO:0005840|GO:0006412
Pste1g00192 177 Gene3D - 137 177 - -
Pste1g00192 177 FunFam 60S ribosomal protein L13 136 177 - -
Pste1g00192 177 Pfam Ribosomal protein L13e 6 155 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00192 Pste-Chr1 703333 704558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00192 7 162 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 86.538 4.55e-99 283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00192 1 703333 704558 Pste7g00517 7 4823595 4825226 PCT