Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00181 ATGTACCAGGATCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCGACTGGAGCATCTGAACCTCGCAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAACTGGAACTTCTTTCCTTGATTTTCGTGAATTTCTAGGTGCTCTGGACAGAGGGGGTGTTGGAGCTCTTGAATTAGTTGCTATGGACATGAAAGCAAGGGGTATGTATTTATGTCGGACACTTAGCTATGAGGGTGCAGAGTTTGAAGTTATTGAAGCACCATTAGAAGATAAAATGATGGAAATATATAAAAAGGCAGCAGAATTTTGGGCTGAATTGCGAGTAGAATTGCTGTCAGCCAGTGCCTTCCTAAATGATAAGCCTAATTCTAGTCAACTGTGGAGATTATATTGGGCAAGCCACCAGCGTTTCTTTAGACACTTGTGTATGTCTGCTAAAGTCCCCGCTGCTGTGAGGCTAGCAAAGCTAGCATTAGTTGAGGAAAAATGTGTAGTTGTTGGTCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCCTTACCAGAAAAACCTGAACTGCTCCCAGGAGAGGATGGGGTAAAAGAACTCCAACGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTAAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGATGAAGAATCTGATACTGACTCTGCCATTGAATCTACTGACTCTGATGATGAGTTTCAGATATGTGAAATTTGCACTACTGAGGAGGAAAGGAAAAAATTGCTACAGTGTTCCTGCTGTGGTAAATTAGTCCATTCCACATGCTTGATGCCACCAATTGGTGATATAGCTCCTGAAGAGTGGTCATGCCATTTATGTAAGGAAAAAACAGATGAATATCTTCAAGCAAGACAGGCCTACATAGCTGAACTTCAGAAGAGGTATGATGCAGCCTTGGAACGTAAGACAAAAATATTAGAGATAATTCGTTCTTTGGATCTTCCAAATAATCCTTTGGATGATATTGTTGACCAGGCCACAAGGGATAAGGAAATATTACTGGCTCAGCAGGTGAATGGTGAAACTAAGGGGTTAAAAGTATATTCTAGGAGGGGAAAAGGTGGGACACAGCATGTGGCTAAGGATCCTAGGGATGTAAAAGTAGTTCACTCCGATTATCCATTGCTAATCTCTTTTCTCGTTGAGGTTTGGAATGTTGTCTACCTTGGAAGACTAGGAGGGCCTGATAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCTGCTACGGGAAAGGGTGTAACTTACCAGGCTCGAAATACAAAAGATGTCACTATGGAAATGGTTAACATGCATGAAAAGCAACTCTTCATGGAGGGCAAAAAGTTAGTTGCTATTATCTCTGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCAGATAGACGAGCTTCAAATCAGAAAAGAAGGGTTCATTTAACTTTAGAACTTCCATGGAGTGCTGACCGGGCTATTCAACAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCTCCAGAATACAGGGCTGGACCTTCATTAAGTGCTTATAATTATGATAGTGCCTATGGAAAGAAGGCTCTAATGGTTATGTATAAAGGAATAATGGAGCAGGATTCTCTGCCTGTGGTACCTCCGGGATGTTCTTCTGACAGACCAGATGCAATTCAAGATTTTATTGTGCAGGCCAAAGCTGCTCTTGTATCTGTTGGAATAGTAAGGGACACAGTTCTTGGTAATGGTAAAGATCTTGGAAGGTTATCTGGTCGTATTATTGATTCGGATATGCACGAAGTTGGACGGTTCCTCAACAGGATTTTGGGACTACCTCCTGATATTCAGAACGGGCTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTTGACACGGGTATTGTTGACTTGAAAGCTAATGTAATTGAACTACAAGGGACTCCAAAGACTGTCCATGTTGATCAATTAACTGGGGCTTCAACAGTTTTGTTTACATTCATATTGGATCGTGGGATCACATGGGAGTTGGCAAGTACAATGCTTAATGAAAAGCAGAAGGATGGGCTTGGTTCAACCAATGATGGCTTCTATGAGTCCAAGAGGGAATGGTTGGGAAGACGTCATTTCATTTTAGCATTTGAAAGTTCTGCTTCGGGTATGTATAAAATAGTTCGCCCCCCTGTTGGAGAATCAAACAGTGCATGCATGGTCCCAATTGTAAAATTGGCAACTTTTGTACAGTTGGTCGAAGACTACAGGAAGTAAATATCTTGGGTGGCCTCATTCTTCCTGTTTGGGGAGCCGTAGAAAAGGCCCTTGCAAAGCAGGCCCGCCTAAGCCATAGGAGGTTACGTGTTGTACGCATTGAAACTACGGTGGACACCCAACGTATTGTTGGGCTTCTTGTTCCTAACGCAGCAGTGGAAACTGTGCTTCAAGGTTTAGCGTGGGTTCAAGAAATTGATGATTGACATATTACTATAGGATTCGCTCAACGTTTTCTTTTTGACAAAGTTTGAACTTAGGTAACTCCATCTTGCAGTTGCTTGCACTATCACCAATATTTGATGTCTTTGAATATCAACAAGCAATTTTTTAGGAAAAGGCTCAACCTTGACGTGGAATTTTGAGGGGAGGACTCATTCTCTACGCCCCACTACACAATTGTGCAGTCTCATTTTTAGTCATTATTTTGTCACCCATTTTGGGATATAATTCGTTTTTTGTATATTTGTAAAGACGATTCGCTGAAAAAGTGAAATATTAGATAGCTAGGTTGTATTACATAGTCCTGTCTGAATCAGTTTGTATCAGAGATATGATGAAAGATTATGGAAAATCATAGTTGAAGTAAATATTCCTTTTGATAAAAAAGTTGATTGTCCAAACAAAGTAATAGACAAGCATACACCACAAATGATTCTCTCTTCACCTACATGAGAACTTATCAACAGACGAAAGGACCCTCAACATGGTCATCACTGCAATAGAGTCCTGGTCGTTGGGTGAAACCTCCCCTCTTCAGCTTCTCTCTTGCCTTCAAAACAATCTCTTGATTTGTGACTGCACCATCATTCTCCTCAATTATAACCTGAATTGCATTGCTAAAAGCTCCATAAGCATTAGCAGAATTACCTGAAGGACTTGCATCTGCAGAGGTTTGGTCGGTTTGACAACCGCTCATCAAAATTCCACTGCTGGGAAGGCGCGGTTTCATTGACCCGGCATATGCCTCATATTTACTGTCTGCCTGTGTTTCCATGGCAGGTTTTGCATACCCTTCTTCATTTGCATCCAGCTTTTGCTTGAGAAACTCTTGTGCAAGACTACCCACCAACCCCAAGATTCCACCATGTTTTTCGCTTCCACCATTCCCAAGTTGCAGTTTATTCAAGATAACCTTCATGAACTTCTTTACTTTAGGGCTAGCATCTTCCCCAAAAATATCATAAAGTGAAAGTCTCAACTTACCAGCATCTATATCATTTTTCCCAGTTTTCTGCCTGAGTATATCTATGATGGTAGAAAGTGGCAATGACCTGTTCTTTACATAGCCGTAGTGCTCATGTGGAA 3735 0.4169 MYQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGTGTSFLDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMEIYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHLCMSAKVPAAVRLAKLALVEEKCVVVGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESDTDSAIESTDSDDEFQICEICTTEEERKKLLQCSCCGKLVHSTCLMPPIGDIAPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAALERKTKILEIIRSLDLPNNPLDDIVDQATRDKEILLAQQVNGETKGLKVYSRRGKGGTQHVAKDPRDVKVVHSDYPLLISFLVEVWNVVYLGRLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMEGKKLVAIISEAGSAGVSLQADRRASNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRAGPSLSAYNYDSAYGKKALMVMYKGIMEQDSLPVVPPGCSSDRPDAIQDFIVQAKAALVSVGIVRDTVLGNGKDLGRLSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQLTGASTVLFTFILDRGITWELASTMLNEKQKDGLGSTNDGFYESKREWLGRRHFILAFESSASGMYKIVRPPVGESNSACMVPIVKLATFVQLVEDYRK 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00181 808 Pfam C-terminal domain on Strawberry notch homologue 441 555 IPR026937 -
Pste1g00181 808 Pfam C-terminal domain on Strawberry notch homologue 557 690 IPR026937 -
Pste1g00181 808 ProSiteProfiles Zinc finger PHD-type profile. 276 326 IPR019787 -
Pste1g00181 808 MobiDBLite consensus disorder prediction 256 271 - -
Pste1g00181 808 MobiDBLite consensus disorder prediction 243 271 - -
Pste1g00181 808 Pfam P-loop containing NTP hydrolase pore-1 3 99 IPR039187 -
Pste1g00181 808 ProSitePatterns Zinc finger PHD-type signature. 279 323 IPR019786 -
Pste1g00181 808 SUPERFAMILY FYVE/PHD zinc finger 270 329 IPR011011 -
Pste1g00181 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 330 IPR013083 -
Pste1g00181 808 PANTHER STRAWBERRY NOTCH-RELATED 3 375 IPR026741 GO:0006355
Pste1g00181 808 Pfam PHD-finger 278 326 IPR019787 -
Pste1g00181 808 SMART PHD_3 278 324 IPR001965 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste1g00181 Helicase_C_4 1.2e-19 CL0023