Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00175 GGTATTCTTAAAATTAAGATTGAATAATGGAAGCAGGTGGTGGGGGCTGATGTGTATATAATTCATGTCCTTATTATGTGAGGCCCTTTCCTCTTTTTCCAACTTTTGCTTTCTCTTCCCTCCCAATTTTCTCTCTCTTTTATTTTTTTGATCTCTGACCTAATTGTCTCTCTTCTGTTCTCATCAATATCACCACTCATCTCCACCCACAACCACAACCACAACCACAACCACAACCCTCCTCATCTTCTCCTGCCTCATCACCTAGATCTCTCTCTCTCTATACACTCATTCATTTACCATAACACTGGGAAGTTTTGTCATAGCTGAGCTGACTCTAGCTAGAGGATATTAAGACTAAGATCATCCAACTTGCAAGTGTTTTTTATTGCTTCTCTGGATCCGCAAAATTCAACATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTGTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACCGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGCGAACCAGAAGCTGCCATGAGAGCTTGCGTGGATGCTGCTCCTGTAATCGACGGAAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCACGGAGGAGCAGGGAGGAACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGGAGTGGGATCCGCTTTTCCTTCCGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTATGAATATGCTTTTACTCTTTATAGCATGCTACTCTCCTCTCTCTCTCTTACATGTACTACTAAGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGGGTGTATGGAGGAGCATCAGCACAGTACCCAGTTTACGGAAGTGGGATGATGACGGGAGCATTCTACCCATATATGCAGTACGGAGAAGGGAGTGGTGGGGGCACAAGCGGCGGATATACTTCCGGACAAGGTTACGGTGTAAACTATGCACCTCATCAGGTGTTTCAGTATTCTCCAATCGCTTCGAGTGGCGGTGGTGCTGCGGGTGGCGGTGGGGGCAGCTATGGCCACCACTATGGAACCCCAATGTCTCTTGCTCCTTCCCCGGCCTTGCAATCAGTCTGTTTTGTTGTGCCGCAGGCGTGACCATGCCTCTTCAACCTCCTCATCGCTAGACACTAGCTATGTCAAAACTTCCCACTCTCTCCATTATCAACATCAACCTTTTGCCCTTAACCATGGTGCTCTCTCTCACTCTCTCACACACATCACATCACATCCACTTTCACTAACACAAACCAAAGTCCATCAATGCCATTTGGGCTTCGGCTTTTCCATGCCCCCCATAGGGGCTCAAATCCCACACTCATGCATATATATATATATATTCCTTTTTCTCCACAATTCACACCCAACAAACACAGGCTATCGGAAATAGCTCACTTGTGTTGCACAAATTGTTAAATAAATCAAAAAAAAAGCTTGGCCCTGCATGGAAAGGCCAAGCCCAAGCATAACTTGGGCCCAAGAAGGGTTTCAAATTTGTAAATGGGAGATCACAGTTCACAGATAGATGCTAAATCATCAACTACAAATTTAGTTCTGTAACAACAGGTATTCCCTCCATTCAAATCAATGCTAATCACCTCTGGATGAAGAGGACCTTTTAGCAATCATGGACATCGGATGTCCCAGCTTTTTTGTATGGTAACATCTACCTAGTCTTAGGTTTTAGTGTTAGGATTGGTCATGTCTTCAAATACTATCTTTTATCAACTTCATTTCAATTTTCACAAAAAAGGGGTTTAACCAACCAACCAATCAACAGTCTTCCCTTTGGGTAAGGGGAGCCAATATCTGACTACTGTTTTGTTTTTTTTTTCCTGTAAATTCAGTGAGGCTAAACTATGGGAGTTTAAGCTCAATCCACTAATTAATCTTTAGGAGGGATAGTGTTTTATTTTCCCACTTAGCATAAGTAGTACATTTCATCATCATCTTGGGAACTACATCAATGGATGTGGAACTCAAAACAATTGCATGTAACCCTGGGAGATATTTTGGTTCCCTTGGGTACTTCACTTACTCACCAACCATGGTTAGGACATAGGTGAATCTCATCACTCTCTATCTCTGTCTTCCTCTCTTTTCCCTACTTTCTATGCGGCAACTTTTACATCGAGATGGACCTTGATACTCTATTAATTATATATCTTTAAGCCTATATGGTTTGGATTGTAATTAGGAATACTAAAGTAGGAGGATTTCATTCTCTATCCATTTCGGATGAGAATGGATTTGCTACTCATTCTACTATGCCCTTTAATTTGATATTATGCTTGCTTTTATTCAACCTACGTCAGGATAAGCAATCACATTAATGCTTCGATCGATGTTAAACTTTTTTGTTATATCTCAATCAAGGAAATTCTGGTAGATGCAATCGAC 2592 0.4252 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGAGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYEYAFTLYSMLLSSLSLTCTTKVLSLLAGLHLPYELLWGVWRSISTVPSLRKWDDDGSILPIYAVRRREWWGHKRRIYFRTRLRCKLCTSSGVSVFSNRFEWRWCCGWRWGQLWPPLWNPNVSCSFPGLAISLFCCAAGVTMPLQPPHR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00175 300 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Pste1g00175 300 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pste1g00175 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Pste1g00175 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Pste1g00175 300 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Pste1g00175 300 Gene3D - 7 112 IPR012677 -
Pste1g00175 300 PANTHER BOULE-RELATED 6 154 - -
Pste1g00175 300 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00175 Pste-Chr1 656723 661750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00175 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 2.36e-13 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00175 1 656723 661750 Pste1g00175 1 656723 661750 ECH