Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00164 ATGGAAAAGGATATGATCTGTGATGTTTCTCCATCATGGGATGGTGATAATGGCAACTCTACTGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTCAACCCTTCAAAAGAGGGCATTGCCAAAGAGTCTGGTGAAGGAGATGAAAGTGTGAATTCCTCTAACTCAGTCTCATCAGGAGGAGAGAAAACTGTGCAGGATAAAACCTCAGCTAAAGACCCTGAAGAGAGGAAGTTTGAGTGCCAATATTGTTACAAGGAATTTGCAAATTCACAAGCATTAGGAGGCCACCAAAATGCTCACAAAAAAGAAAGAATGAAGAAGAAGAGGTTGCAGCTTCAATCTATAAACCGTTACTTACAACACCCTTTCCCATCCAACCATGGATTTGCTTACCAAGCCTCTGATTCTCCTTGGTTCTATGATCCCTCTACCTACAACTCTGAGTTTACCCTTTCTGAAGAACCTCAGATTAGCTTCAATTCAAATGTTTTAGATAACAACTTTTCTCTTGATCAGAAATCTAGTTGGTATTCTATGGCATCAAACCCTCCTTCCCAACAAGATACTTGCATGTTTACTTTCTCAAGTGCAAATAATAATACCCCTTTCATCTTCAAGCCTTGCCACTTCCCTGCTTCAAACCAGAGCCATAGTAAAGCCCTAGATCTTCAACTAGGCCTCAACTTGCAGTCAAATACAAGAAGTTCTCTACGAAGGATGTAA 723 0.4066 MEKDMICDVSPSWDGDNGNSTEKRLRLFGFELNPSKEGIAKESGEGDESVNSSNSVSSGGEKTVQDKTSAKDPEERKFECQYCYKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPFPSNHGFAYQASDSPWFYDPSTYNSEFTLSEEPQISFNSNVLDNNFSLDQKSSWYSMASNPPSQQDTCMFTFSSANNNTPFIFKPCHFPASNQSHSKALDLQLGLNLQSNTRSSLRRM 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00164 240 MobiDBLite consensus disorder prediction 46 64 - -
Pste1g00164 240 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Pste1g00164 240 MobiDBLite consensus disorder prediction 1 20 - -
Pste1g00164 240 SUPERFAMILY beta-beta-alpha zinc fingers 74 105 IPR036236 -
Pste1g00164 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Pste1g00164 240 Gene3D Classic Zinc Finger 52 126 - -
Pste1g00164 240 Pfam C2H2-type zinc finger 78 103 - -
Pste1g00164 240 PANTHER ZINC FINGER PROTEIN 5 19 230 IPR044299 GO:0010090
Pste1g00164 240 MobiDBLite consensus disorder prediction 36 72 - -
Pste1g00164 240 FunFam zinc finger protein 5 52 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00164 Pste-Chr1 629540 630262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00164 20 152 C2H2 Transcription Factor Family AT1G68360 35.329 1.07e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g00164 zf-C2H2_6 6.5e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00164 1 629540 630262 Pste1g00164 1 629540 630262 ECH