Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00152 GTCCTCTCCCGACTAATCCCTAGCTCGCTCTCTCTCTCTCGACTCTCACACTCTGCCGCCTCATTCTCGCCGGCGATTTTATCGGCTCCGGCAGCGAACTCTACCGACGATCACTTCAGCCTCAACCACGGATTGGTGAAAGGTGTAAAGGTACTTTGATGCACTGTTGCAAAAAGGTAATTACGGATGTTTTTATTCGATAGTATATTTGTTGGTTGGTACAGTAGATTATAGGAAAAGGAAGCAAAAAACATTTGGAATGATTTGCTATGGCCCAGCAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAATTGGGATACAAGAGTTGCAGCTGCTCATGCAATTGGGTCAATTGCTGAGAATGTTAAGCACACAAATTTGACTGAACTTTGTGCTTCTGTTGTATCCAAAATTTCCGAGAATGGGATATCTTGTAGTATTGAGGATCTGTGTGCATGGCCTTATTTACAATCAAAAATTACAGGAAGCTCGTTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCCTTATTAGCATCCGGGGGACAGGAATATGATATTGGAAATGATAATATCAAGAACCCAAAGGAGCGTTTGGTTCGCCAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCATCCAAATCAGATTCCCATATGAATGGGATAGATCGTAGAGTTTTTACATCTTGTTCTGCACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCTAAGGATCAAACAAAAAGCTGGTGTGAAGATGGAAGTACAGAGGCATCAGGTGCTCAAAATTTAACTTCAAAAGGCACATGTCCTGATTCAGTAAATTACAATAAGGCATTCATGGATGTTAATCATGATGAAGATGGCTTTGATCATGATGGGGATGGACATTGGCCTTTCCACACTTTTGTTGAACAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGGCATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGAGTATTTAAACATGATTCACGCATGGGTGGGGCCTTGTTTATTGAATTAGAAGACAATAGTGTACCAAATATATTGAAGAGGGAGAGGGAAATTGATTTAAATATGCAAGTTTCGCCAGATGAGTTTGTTTCTAACTTGAAGAGGCCAAAACTAGAAGATGTATCATCATCAACCTCTATGGATAGTATGATGACTGGCATCAATGAAGGTGATACTGAAATCAGCATTAGTTCTGAAACTCATGGATGCAATTTAACTTTGGATTATGGGAATGGGCAATTTAATGGTAATTTTGTTGACATGGATCTGGAATCTTACTCTGATGGCTTACATGATGTGTGCAATGAGCCTACTAATATAGCAGAACAGAAGGGTCTTTCTGATGACCATAAGATTTCCCTTGGGAATCCTAATGTGCTGAGAAATCTTCCTCAGAATTTTGATCTGAGGAACTCAGTTAAAGTGGCTAGAAGTTGCTGGCTTCGAAACTGTGAATTTCTTCAAGACTGTGTGATACGCTTTTTGTGTGTGTTGTCACTTGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCTGTACTAGTAAATGAAACGTTAAACATATTGTTGAAAATGCAGGAGATGCTTTCTGATTTGCTTGGACGTGTTCTTCCTGCTTGTAAAGCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTAGCTGCTGATGCTTTAATACCAGCTGCATCTGCAATTGTATTCTTGCAGGGTCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACCAGCAGTGTAATGAATCTGCTGGCTGAAATCTATTCTCAAGAAGAGATGGCCCCAAAGATGTATAAAGTTTTTAAATTGGGAGACAAGGAAATGGAAAATGGAGTTGGTGGTTGTGGTTATGATGTTGGAGAAGAAAATCCTTACGTGCTTTCAACATTGGCACCGCGTTTGTGGCCTTTTATGAGGCACAGTATCACATCTGTTCGTTATTCTGCAATGCGAACTTTGGAGAGGCTACTTGAAGCTGGATATAAGAGAAGCTCTTCTGAGTTGTCCAGTGCTTCATTCTGGCCCTCTTTTATATTTGGAGATACCCTTAGAATTTGTTCTGTGGAGGACCTGGAGATGGCTGCAAGATCTTATGCGGCTTCTTGGATAGAACTTGCATCTACACCATTTGGCTCAGCACTCGATGCCTCAAAGATGTATTGGCCTGTTGCCTTTCCACGGAAAAGTCAGATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAATTTGAAAATGAATGTGGTGTAGATTTTAGTCTTGATTCTATAAAAGGAACTATTCCACAAGATAGAAATGGAGATGTTCCTATCAGTTCTGTTAAGATAGTTGTTGGTGCTGATGTGGACACATCTGTAACTCATACCCGGGTAGTTACAGCAACTGCCTTGGGAATTTTTGCTTCTAAGCTGCCAGAGGGTTCTTTAAAATATGTGATTGATCCACTGTGGAACTCTCTAACCTCGTTGTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTTAAGGAGAGTAAAAACAGCAATTCGTCAAAAAACCTTGATGCAATCCCTGGTGCTCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTTCCAACAAAAGATTCGGTTCTTCCTTATGCGGAGCTTTCCAGGACTTATGCAAAGATGCGTAGTGAGGCTGGTCAATTGCTAAATGTAGTCAAATCTTCTGGTATGTTCAATGAGTTAATGACAGCTACACAAATAGATTTGGATCGCTTGAGTGTGGATGATGCGATTAGTTTTGCATCAAAAGTTCCAGCATTGTGTAATGATAGTTCTGCAAATGAATCCTTGGGAAAGAACATAATGGATGAAATTGAATCCTCCAAACAGAGACTCTTAACAACTTCTGGATATTTAAAATGTGTTCAGATTTTTGAGATGCTTATTTCTGCTTCATGGGATGGCTTGCAGAGTAATTTGCATGTTACAGTCACATCTGCAGTTGCGGCTGCAGTTGTTTGGATGTCTGAATTTCCTACACGACTTACCCCAATCATTTTGCCTTTGATGGCTTCAATCAAACGAGAGCAGGAGGAAATACTGCAAATGAAGTCTGCTGAGGCCCTTGCCGAGCTAATGTATCACTGTGTTGCACGAAGACCTTGTCCTAATGATAAATTAATTAAGAATATATGTACTTTAACTTGCATGGATCCCTCCGAGACACCTCAAGCCAAATCCCTTTGTACCATGGAGAGTATTGATGACCAAGGCCTTCTTTCTTTTAAAACTCCTGTTAGCAAGCAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGGTCTAAGGTGGAGGGATTTTTAAGTAGACGAGGATCTGAGCTGTCGTTGAGGCTTCTATGTGAAAAGTTTGGTGCCTCATTATTTGATAAACTTCCTAAGCTGTGGGATTGTCTTACTGAAGTGCTTAAGCCCAGCTCCTCTGAATCTCTACTTGTCTCTAATGAAAAGCAAGTTACTGTGTCCATTGAGTCTGTTAGTGATCCTCAGACGTTGATTAACAATATCCAGGTGGTGCGCTCTGTTGCTCCTGTGTTAAATGAGGAATTGAAGCCAAAACTTTTGACACTTCTCCCATGCATTTTCAAATGTGTGCAGCATTCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCTCAGTCAATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCTATGCTGGAAGATGCATCATCAGTTTATGCTCGACAAGGAGCGGGCATGTTAATTAGTTTTCTTGTTCAGGGTCTTGGTGTAGAATTGGTTCCTTATGCTCCTCTATTGGTGGTTCCCCTTCTAAGGTGCATGAGTGACTGTGATCAGTCTGTTAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTGGCGCGAGGCCTTCCTCAACCGATTGGATTAGGGGAAGGTGTTTCTAGAAATGTAGAAGATTTGCAGTTTTTGGAGCAACTGCTTGACAACTCACATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAAGAAGGCATAAATTGGTTAGCTTTTTTAAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCCGCAATTGTGGCCTCTGATATAGCTGAGTATCGAACTTCAATTGGGAATGAGGATCTTCTTCCATCTTTAATTATTTGCCCATCAACTCTTGTTGGGCACTGGGCATTTGAGATAGAGAAGTATATTGATGTTTCCGTGATATCTAGTCTTCAATATGTTGGTTCTGCTCAGGAGCGAATGCTTCTTCGAGATAATTTTTGTAAGCATAATGTCATCATAACGTCATATGATGTTGTCCGTAAAGATATTGATTTTCTGGGACTGCTGCTGTGGAATTATTGCATTTTAGATGAAGGGCATATAATCAAGAATGCCAAGTCTAAAGTTACACTTGCTGTTAAACAGATGAAAGCCCAACATCGTTTGATATTGAGTGGGACGCCTATACAGTTCCAAGCCACATATGGAAAACCGCTTTTAGCTGCAAGAGATCCAAAATGTTCTGCTAAGGATGCAGAAGCTGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTGCGTAGGACAAAGGACGAAGTCTTGTCTGACCTGCCAGAAAAAATAATTCAAGATAGATATTGTGATTTGAGCCCTGTACAACTCAAACTCTATGAGCAGTTTTCTGGTTCACATGTAAAACAAGAAATGTCGACTATTGTAACAACAAATGAGTCCACTGCAGCAGAAGGAAGTAGCAGTTCGACTAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATACTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCATTGGTGAGAAGATTCCTGATTCACTTTCTACCGCCCTCTCTGAACTGTTTCCTACCAGTTCTGATGTTATTTCAGAACTTCACAAACTCTATCACTCCCCAAAATTAGTTGCTCTTAATGAGATTCTTGAAGAGTGTGGAATTGGAGTCGATAATTCAGGTTCTGAGAGTGCTGTTAACGTTGGCCAGCATAGGGTCTTGATATTCGCCCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAGTGTCACGTATTTGCGGTTGGATGGATCAGTTCAGCCAGAAAAGCGTTTTGAAATTGTTAAAGCTTTCAATTCTGACCCTACTATTGATGTCTTACTGCTTACAACACATGTGGGTGGGCTTGGTTTGAACCTGACATCAGCTGATACCCTTGTTTTTGTCGAGCATGACTGGAATCCTATGCGAGATCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGGTTCAAAGTTTTAGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAAAACAATGAACACAGATCAGTTGCTTGATTTATTTGCGTCAGCAGAAACCTCCAAGAAGGGCGCATCTGCTGTGAAGAGTTCGGAGAACAACTCTGATGGAGACACAAAATTAATAGGCAGTGGGAAGGGATTGAAATCAATACTTGGGGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCAAGGCTTAATGGCTAATATTCCAGATTCATTTCAGAGTGTACATATCCAAGAGTACAAATTTTGACATTGTAACATCTCAATTTTTTCCCCACCATGCCCTTCAGTCATTTTTTGTCGTCACTTTTTGGATACCCCAAGGCTTCTGCTCTTGAGCATGTAAGCCAGGTAAATCGGTTCTGTATTTACTGGCATTGAGAATAGCGAGGTTTGAGTGACTGGTGGAGGCCCTTGGTGGTGATATGTAGAGAATTGAAGCAGTGACGGCTTCAGGAGGGATGGAGTAATATTTTTTGGATTTTGTATATATACAATCAATCCTAATTATAGTTATAATCTTTGCTAACATAAAA 6583 0.4083 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHTNLTELCASVVSKISENGISCSIEDLCAWPYLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMASKSDSHMNGIDRRVFTSCSAHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGSTEASGAQNLTSKGTCPDSVNYNKAFMDVNHDEDGFDHDGDGHWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKHDSRMGGALFIELEDNSVPNILKREREIDLNMQVSPDEFVSNLKRPKLEDVSSSTSMDSMMTGINEGDTEISISSETHGCNLTLDYGNGQFNGNFVDMDLESYSDGLHDVCNEPTNIAEQKGLSDDHKISLGNPNVLRNLPQNFDLRNSVKVARSCWLRNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPVLVNETLNILLKMQEMLSDLLGRVLPACKAGLEDPDDDVRAVAADALIPAASAIVFLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMAPKMYKVFKLGDKEMENGVGGCGYDVGEENPYVLSTLAPRLWPFMRHSITSVRYSAMRTLERLLEAGYKRSSSELSSASFWPSFIFGDTLRICSVEDLEMAARSYAASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKFENECGVDFSLDSIKGTIPQDRNGDVPISSVKIVVGADVDTSVTHTRVVTATALGIFASKLPEGSLKYVIDPLWNSLTSLSGVQRQVASMVLISWFKESKNSNSSKNLDAIPGALKDWLLDLLACSDPAFPTKDSVLPYAELSRTYAKMRSEAGQLLNVVKSSGMFNELMTATQIDLDRLSVDDAISFASKVPALCNDSSANESLGKNIMDEIESSKQRLLTTSGYLKCVQIFEMLISASWDGLQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQMKSAEALAELMYHCVARRPCPNDKLIKNICTLTCMDPSETPQAKSLCTMESIDDQGLLSFKTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPSSSESLLVSNEKQVTVSIESVSDPQTLINNIQVVRSVAPVLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSMAQSMTVKVMGAVVENAIPMLEDASSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNVEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEYRTSIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMLLRDNFCKHNVIITSYDVVRKDIDFLGLLLWNYCILDEGHIIKNAKSKVTLAVKQMKAQHRLILSGTPIQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSHVKQEMSTIVTTNESTAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLSTALSELFPTSSDVISELHKLYHSPKLVALNEILEECGIGVDNSGSESAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVQPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVLVANAVINAENASMKTMNTDQLLDLFASAETSKKGASAVKSSENNSDGDTKLIGSGKGLKSILGGLEELWDQSQYTEEYNLSQFLARLNG 1992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00152 1992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1629 1930 IPR027417 -
Pste1g00152 1992 Pfam Domain of unknown function (DUF3535) 736 1202 IPR022707 -
Pste1g00152 1992 Gene3D - 1216 1381 IPR011989 -
Pste1g00152 1992 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Pste1g00152 1992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1399 1628 IPR027417 -
Pste1g00152 1992 Gene3D - 4 93 IPR011989 -
Pste1g00152 1992 SMART ultradead3 1415 1608 IPR014001 -
Pste1g00152 1992 SUPERFAMILY ARM repeat 6 1458 IPR016024 -
Pste1g00152 1992 SMART helicmild6 1788 1874 IPR001650 -
Pste1g00152 1992 Pfam Helicase conserved C-terminal domain 1772 1874 IPR001650 -
Pste1g00152 1992 CDD DEXHc_Mot1 1419 1628 IPR044078 GO:0005524
Pste1g00152 1992 CDD SF2_C_SNF 1743 1885 - -
Pste1g00152 1992 MobiDBLite consensus disorder prediction 245 267 - -
Pste1g00152 1992 Gene3D - 1391 1627 IPR038718 -
Pste1g00152 1992 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1431 1601 IPR014001 -
Pste1g00152 1992 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1764 1924 IPR001650 -
Pste1g00152 1992 MobiDBLite consensus disorder prediction 251 267 - -
Pste1g00152 1992 Gene3D - 1638 1955 IPR027417 -
Pste1g00152 1992 Gene3D - 499 761 IPR011989 -
Pste1g00152 1992 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 741 IPR044972 GO:0003677|GO:0016887|GO:0017025
Pste1g00152 1992 FunFam TATA-binding protein-associated factor BTAF1 1166 1377 - -
Pste1g00152 1992 FunFam TATA-binding protein-associated factor 172 1638 1955 - -
Pste1g00152 1992 Pfam SNF2-related domain 1437 1710 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00152 Pste-Chr1 591304 618494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00152 1414 1929 RAD5 or RAD16-like Gene Family AT1G02670 26.506 9.52e-38 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste1g00152 DUF3535 8.3e-98 No_clan