Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00118 AAAGGATTCATAGAGTAAGAGGTTGTGACGAGTTGCCAAGATGAATGATGAGATGGAAGTGAAAGGGTAAAGGGTGCAGAAGAAGACAACAGAAAAGAAAGCAGTGTAGTTAATTGGTAATTGACATTTGGCATTTAACACAAGTTATCTATCCCAACTCCCAAACCCTCTGGTCTGCTCCATTGTTTAATTAAATAAGGCGGATATGCATCCAACATCCGCCGCCCCTCTGCCCAGATTCCGGTCAACTCCGGCAAGCTGGATAGAATCGGTTCTTCTCAAGGAGGAAAGTGAAGGAGAAGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACCCCTTAAGCTTCACTCAGCTCCTATCCACTATCCATGTTCCCTCTCTTTCCACGCCCACGCCCACGCCCACGCCCAAGGAACTTGATTCCGTACCTTGTAGGGTTCGGGCAAAGCGTGGGTGTGCTACGCATCCCAGGAGTATCGCTGAAAGGGTCAGGAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAACAACTTGTGCCCAACATGGATAAGCAAACAAATACTGCAGATATGTTAGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAAGCAAATTGAGGTACGCTTATTTGTGTGTCTAGACTTATGCTTGAACTGTCAGAGCACCAACGGAGGTGTAAATGCATGGCGCAGGAATAATTTGCTGGTTGTTCCATACAGTGTTGGCTGTTTACGATTTGTTTTATGAATTATCAGATTTTTTTCGGGTTCTGATGAAGATCAAGCATGCACTGTGGTGCTAATTATATATAATATCTGGAGATATCTTAAAAGATGCATACGCATATTTGGGGTGGCATTGTCAAGTTGGAGCGAATCAAGTTCAAATATAATTTCCCCAAGCGTGGTATATTTTGTAGTATTGTACAACTCTTAAGAAACACAAATATGCAATATGTTGAAATTTTTTATTAAAGATATACGTAGCTATATGTTGAAATTTTTGC 1016 0.4203 MHPTSAAPLPRFRSTPASWIESVLLKEESEGEGEGEEEEEEEEEDPLSFTQLLSTIHVPSLSTPTPTPTPKELDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQQLVPNMDKQTNTADMLDEAVAYVKFLQKQIEVRLFVCLDLCLNCQSTNGGVNAWRRNNLLVVPYSVGCLRFVL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00118 183 SMART finulus 92 142 IPR011598 GO:0046983
Pste1g00118 183 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 143 IPR036638 GO:0046983
Pste1g00118 183 MobiDBLite consensus disorder prediction 30 47 - -
Pste1g00118 183 CDD bHLH_AtbHLH_like 91 142 IPR045239 -
Pste1g00118 183 MobiDBLite consensus disorder prediction 1 48 - -
Pste1g00118 183 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 142 - -
Pste1g00118 183 Pfam Helix-loop-helix DNA-binding domain 91 137 IPR011598 GO:0046983
Pste1g00118 183 Gene3D - 87 144 IPR036638 GO:0046983
Pste1g00118 183 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 136 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00118 Pste-Chr1 453714 456052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00118 16 149 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 50.000 7.72e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g00118 HLH 9.7e-10 No_clan