Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00097 GGGTAAGACAAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGATGAGCATGAGCATGGGCACGCAGCTTCCGTGTGACAGCGAAGGCGCCTGTATGGTGTGCAGGGGCGTGCCCGGAGAAGAAGAGAGACTGGTGTGCATCACGTGCGATACCCCTTGGCACGTGCCCTGTCTGTCAGCCCCTCCATCCTCCCTGGAGGCCGCCTCCCGCTGGCCGTGTCCCGATTGTTCTGATCTCCACTCCGACGTTCCGCCACTCCCTGCTCCCCTCCGCAACGAACTCGTCACTGCAATGCTTGCCGTTGAAAACGACCCTTCTCTCTCCCAACAAGAGAAGGCCAGAAGACGCCAACAGCTTATCACTGGAAAGTCTCCTCAAGAACAACATCAACAACAACAACAAGAAGATGATAAGGCCTCTGTATCCGATATTCTCGCCAGATCTCTCAACTGCTCCATCTGTATCCAGTTACCGGAGCGACCCGTCACGACTCCCTGTGGACACAGTTTCTGTTTGAAGTGCTTTGAGAAATGGATTCGGCAAGGGAAGAGGAACTGTGCCAAGTGCCGACAGATTATTCCCGCCAAGATGGCAAGCCAGCCCCGTATAAACTCTGCATTGGTGTTTGCCATACGCATGGCCAGACAGGCTTCTAACAATAATGTCACTGGTGGAAGAGCACCCAGAGTTAACCATTTTCTTCACAATCAAGATAGACCAGATCAGCCATTTACAACTGAACGAGCACAGAGGAGTGGTCGAGCCAATGCCGCAAGTGGCAAAATATTTGTGACTGTTCCCACTGACCATTTTGGTCCAATTACTGCAGATAATGATCCTCTGCGTAACCAGGGTCTTCTTGTTGGTGAAACTTGGAGAGACAGACTGGAATGCAGGCAATGGGGTGCTCACTTTGTCCCTGTTGGTGGCATTGCCGGACAATCCAATCGCGGTGCCCAATCTGTTGTTCTTTCTGGTGGTTATGTAGATGACCAGGATCATGGAGAATGGTTTCTCTACACCGGAAGCGGTGGCAAGGATCTTAGTGGCAACAAACGCACCAACAAGAGTCACTCTTTTGATCAGAAGTTTGAGAAATACAACCGAGCTCTTCAAGTCAGCTGTCTCCAGGGTTATCCAGTTCGGGTTGTCAGATCTCACAAAGAAAAGCGATCCTCATATGCTCCCGAGTCTGGTGTGCGCTATGATGGAATTTATAGAATTGAAAAGTGCTGGCAGATAGCGGGATTACAGGGTTTCAAAGTCTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCTGCCCCTTGGACTAGTGATGATCATGGAGATAGGCCCAGACCCTTGCCAACTATACATGAACTGAAAAAAGCTACAGTTGTATTTGAAAGAACTGAAACTCCATCTTGGGATTTTGATGAGGAAAATTCTCGTTGGAAGTGGAATAAACCCCCACCTCCCAGCAGACAAAAGGTGCAAAATAAGGAGCCTATGGAGGTGGTGAGGGCCAAGTCAGATAGAGAAATAAAGAAATTCCAACTTAAGTCAATCAAGGAACAATTGCAGAGAGGGTTCTCGTGCATGATATGCAAGGAGGTCATGGTTTCGCCAGTGACAACACCGTGTGCTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGAATTTTCTGGTCAGGCATTTGTGAAGGAGAGAATCAGGGGTGGGAGAACACTTCGGTCCCAAAAAAATGTGATGAAATGTCCTTCTTGCTCATTTGATATTTCTGATTATCTTCAAAACATTCAGGTTGATGTAGATTTGAAGAGTGCAATTGAGTCATTGAAAATCAAGATTGAAGAAATTGGAGAATCAGTGGAGTCAAGTAAAGATGTGGATGAATTACAGGATGATGGCACTGGCAAGGATGAAGATACTGACTCTGGAAACAAAAATTCTGTAGAGGAGTTGAATGTTGGTTTACCTAAAGGGTATGATGTTGGTGACCTTAAAGACACAAGCAAGGGGCCACATCTAGATGTGAAGTGCAATGGAAAGAGAAAGAAAGGTGATTGTGGAAATCAATCACCTGATGCTAAAAGGGAAAAAAGAGGTGAAAGATATAGAAAGATTGAGGAAGCATTGCACGAAGAAAATGATTCATCATCAAGTCCTCCCAATCTTTCATGA 2194 0.4676 MSMSMGTQLPCDSEGACMVCRGVPGEEERLVCITCDTPWHVPCLSAPPSSLEAASRWPCPDCSDLHSDVPPLPAPLRNELVTAMLAVENDPSLSQQEKARRRQQLITGKSPQEQHQQQQQEDDKASVSDILARSLNCSICIQLPERPVTTPCGHSFCLKCFEKWIRQGKRNCAKCRQIIPAKMASQPRINSALVFAIRMARQASNNNVTGGRAPRVNHFLHNQDRPDQPFTTERAQRSGRANAASGKIFVTVPTDHFGPITADNDPLRNQGLLVGETWRDRLECRQWGAHFVPVGGIAGQSNRGAQSVVLSGGYVDDQDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNRALQVSCLQGYPVRVVRSHKEKRSSYAPESGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPTIHELKKATVVFERTETPSWDFDEENSRWKWNKPPPPSRQKVQNKEPMEVVRAKSDREIKKFQLKSIKEQLQRGFSCMICKEVMVSPVTTPCAHNFCKSCLEGEFSGQAFVKERIRGGRTLRSQKNVMKCPSCSFDISDYLQNIQVDVDLKSAIESLKIKIEEIGESVESSKDVDELQDDGTGKDEDTDSGNKNSVEELNVGLPKGYDVGDLKDTSKGPHLDVKCNGKRKKGDCGNQSPDAKREKRGERYRKIEEALHEENDSSSSPPNLS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00097 707 MobiDBLite consensus disorder prediction 604 684 - -
Pste1g00097 707 SUPERFAMILY RING/U-box 505 595 - -
Pste1g00097 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 65 IPR013083 -
Pste1g00097 707 ProSitePatterns Zinc finger RING-type signature. 528 537 IPR017907 -
Pste1g00097 707 SMART ring_2 17 62 IPR001841 -
Pste1g00097 707 SMART ring_2 513 569 IPR001841 -
Pste1g00097 707 SMART ring_2 137 175 IPR001841 -
Pste1g00097 707 ProSiteProfiles YDG domain profile. 267 415 IPR003105 -
Pste1g00097 707 Pfam RING-type zinc-finger 513 567 IPR027370 -
Pste1g00097 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 7 611 IPR045134 -
Pste1g00097 707 SMART PHD_3 16 63 IPR001965 -
Pste1g00097 707 MobiDBLite consensus disorder prediction 646 684 - -
Pste1g00097 707 MobiDBLite consensus disorder prediction 219 242 - -
Pste1g00097 707 CDD RING-HC_ORTHRUS_rpt1 134 180 IPR047498 -
Pste1g00097 707 SUPERFAMILY PUA domain-like 241 438 IPR015947 -
Pste1g00097 707 Pfam SAD/SRA domain 270 418 IPR003105 -
Pste1g00097 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 202 IPR013083 -
Pste1g00097 707 SUPERFAMILY FYVE/PHD zinc finger 6 72 IPR011011 -
Pste1g00097 707 SUPERFAMILY RING/U-box 131 193 - -
Pste1g00097 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 615 IPR013083 -
Pste1g00097 707 MobiDBLite consensus disorder prediction 88 125 - -
Pste1g00097 707 FunFam Predicted protein 96 202 - -
Pste1g00097 707 Gene3D - 238 435 IPR036987 -
Pste1g00097 707 ProSiteProfiles Zinc finger RING-type profile. 137 176 IPR001841 -
Pste1g00097 707 MobiDBLite consensus disorder prediction 461 483 - -
Pste1g00097 707 ProSiteProfiles Zinc finger RING-type profile. 513 570 IPR001841 -
Pste1g00097 707 Pfam Zinc finger, C3HC4 type (RING finger) 137 175 IPR018957 GO:0046872
Pste1g00097 707 MobiDBLite consensus disorder prediction 88 115 - -
Pste1g00097 707 MobiDBLite consensus disorder prediction 604 629 - -
Pste1g00097 707 SMART G9a_1 262 419 IPR003105 -
Pste1g00097 707 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 238 433 - -
Pste1g00097 707 ProSitePatterns Zinc finger PHD-type signature. 17 62 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00097 Pste-Chr1 409455 412664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00097 3 604 C2H2 Transcription Factor Family AT5G39550 56.240 0.0 686