Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00062 CTCTCACTTTCTTCTGCCTAGATGCTCTGCACCTATTGGGCCGTGACGTGATTTCCGTCACCGACGTGTTGCTCTGTGAAACCCCCACTGAGGCATATTTCGTTGAATGAATCTTAGAGAGAGTGTGACCTTTGGATCTGAAATGGGCTTCTTCGGTTTCATCGTGTTGATGATGGGGTCACTCTTTTTGTTCAAAGCTTTCGATTTTACTTTCTGGGTCTCCTTCTTCTGCTGCGTTTGATTCCCCCAATTCTTCACTTTTCAAACCCTAATTTGTTGCCATGAGGAAGAAGTTGGATACCCGTTTCCCTGCTGCTCGCATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAAACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGGGTTCCTGACTATGGCCATGGCCATGGCCATGCTGAGACGGGTGCTGATGATCGTGCCATTTCAAAACGAAGGAAAGCTGTCGGTGAGGATGGTAATGACAGTGACGAAGAAGCTAAGAGGAGCAAGATGCTTGAGTTGGGCCACACTGGCAATACTGGTAGGGGAAGAGGCAGAGGTAGAGGAAGAGGCCGTGGCCGAGGGCGACCACCTCTAGCAAGAGAGACATATCATCATGATGCTGAATCAGAGCCATGCACTTCTGTTCAGCCGAGCAACCAACAAAACACAAACTCAAGCATCGTGATGGATAGTGGTCCTGAGTCAAAGGAGATAATACCAAAGGAGGAGAATACTGCAGTTCCTGTTGTAAGCACTGATTCACTACGGAACATTGATCTGAATGCCACTGATGTGAATGCCACTAATGAAAACGATGACAAAAAGGATGTCAAAAAGGCTAGCCCCACGGCCGATGCCTCATTGCCAGAACCTCCGATAGAGAGCAAGCATGAGGAGATTCCAGGATGGTCGCTTTCTGATGTGGACAAGATGGCCATTGATTCAATGCAGCTTGCACAACTTGGTAGGCCACTAGAAGAGGAGGAGGAAGATTATGATGAGGAGGAGGGGTAAATAATATAGTCTTTGGGTGATTAGATTAGTGAAAAGGTCATGATAACTGTAGAATAAGTACATACTAGTGCTATGATTATGAGTATCCACTAGCTGTCAAAACATGCCCCATGTTGTTGGCAGAAGATCTGAATGGCCCTTTTTATTAATCTGGTTTGTCTTTGTAGCTCATGTATCTTTCCCTTGACCGGTAATGTTAACTTTGTGTACTTTTAGGCCTACAATGTATATCACAATTCTAGATGGAGTGAAATTTATGCATCCAGACTTAATTTAATATTGCTGCAAACAACTCTAACTATTTGCTTCA 1482 0.4372 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAETGADDRAISKRRKAVGEDGNDSDEEAKRSKMLELGHTGNTGRGRGRGRGRGRGRGRPPLARETYHHDAESEPCTSVQPSNQQNTNSSIVMDSGPESKEIIPKEENTAVPVVSTDSLRNIDLNATDVNATNENDDKKDVKKASPTADASLPEPPIESKHEEIPGWSLSDVDKMAIDSMQLAQLGRPLEEEEEDYDEEEG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00062 296 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Pste1g00062 296 MobiDBLite consensus disorder prediction 110 296 - -
Pste1g00062 296 MobiDBLite consensus disorder prediction 206 226 - -
Pste1g00062 296 MobiDBLite consensus disorder prediction 153 167 - -
Pste1g00062 296 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 118 - -
Pste1g00062 296 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Pste1g00062 296 MobiDBLite consensus disorder prediction 168 190 - -
Pste1g00062 296 SUPERFAMILY Histone-fold 4 96 IPR009072 GO:0046982
Pste1g00062 296 MobiDBLite consensus disorder prediction 110 130 - -
Pste1g00062 296 FunFam dr1-associated corepressor homolog 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00062 Pste-Chr1 282886 290987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00062 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.660 2.44e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pste1g00062 CBFD_NFYB_HMF 2.2e-19 CL0012