LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g00062	CTCTCACTTTCTTCTGCCTAGATGCTCTGCACCTATTGGGCCGTGACGTGATTTCCGTCACCGACGTGTTGCTCTGTGAAACCCCCACTGAGGCATATTTCGTTGAATGAATCTTAGAGAGAGTGTGACCTTTGGATCTGAAATGGGCTTCTTCGGTTTCATCGTGTTGATGATGGGGTCACTCTTTTTGTTCAAAGCTTTCGATTTTACTTTCTGGGTCTCCTTCTTCTGCTGCGTTTGATTCCCCCAATTCTTCACTTTTCAAACCCTAATTTGTTGCCATGAGGAAGAAGTTGGATACCCGTTTCCCTGCTGCTCGCATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAAACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGGGTTCCTGACTATGGCCATGGCCATGGCCATGCTGAGACGGGTGCTGATGATCGTGCCATTTCAAAACGAAGGAAAGCTGTCGGTGAGGATGGTAATGACAGTGACGAAGAAGCTAAGAGGAGCAAGATGCTTGAGTTGGGCCACACTGGCAATACTGGTAGGGGAAGAGGCAGAGGTAGAGGAAGAGGCCGTGGCCGAGGGCGACCACCTCTAGCAAGAGAGACATATCATCATGATGCTGAATCAGAGCCATGCACTTCTGTTCAGCCGAGCAACCAACAAAACACAAACTCAAGCATCGTGATGGATAGTGGTCCTGAGTCAAAGGAGATAATACCAAAGGAGGAGAATACTGCAGTTCCTGTTGTAAGCACTGATTCACTACGGAACATTGATCTGAATGCCACTGATGTGAATGCCACTAATGAAAACGATGACAAAAAGGATGTCAAAAAGGCTAGCCCCACGGCCGATGCCTCATTGCCAGAACCTCCGATAGAGAGCAAGCATGAGGAGATTCCAGGATGGTCGCTTTCTGATGTGGACAAGATGGCCATTGATTCAATGCAGCTTGCACAACTTGGTAGGCCACTAGAAGAGGAGGAGGAAGATTATGATGAGGAGGAGGGGTAAATAATATAGTCTTTGGGTGATTAGATTAGTGAAAAGGTCATGATAACTGTAGAATAAGTACATACTAGTGCTATGATTATGAGTATCCACTAGCTGTCAAAACATGCCCCATGTTGTTGGCAGAAGATCTGAATGGCCCTTTTTATTAATCTGGTTTGTCTTTGTAGCTCATGTATCTTTCCCTTGACCGGTAATGTTAACTTTGTGTACTTTTAGGCCTACAATGTATATCACAATTCTAGATGGAGTGAAATTTATGCATCCAGACTTAATTTAATATTGCTGCAAACAACTCTAACTATTTGCTTCA	1482	0.4372	MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAETGADDRAISKRRKAVGEDGNDSDEEAKRSKMLELGHTGNTGRGRGRGRGRGRGRGRPPLARETYHHDAESEPCTSVQPSNQQNTNSSIVMDSGPESKEIIPKEENTAVPVVSTDSLRNIDLNATDVNATNENDDKKDVKKASPTADASLPEPPIESKHEEIPGWSLSDVDKMAIDSMQLAQLGRPLEEEEEDYDEEEG	296

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g00062	296	Gene3D	Histone, subunit A	1	86	IPR009072	GO:0046982
	Pste1g00062	296	MobiDBLite	consensus disorder prediction	110	296	-	-
	Pste1g00062	296	MobiDBLite	consensus disorder prediction	206	226	-	-
	Pste1g00062	296	MobiDBLite	consensus disorder prediction	153	167	-	-
	Pste1g00062	296	PANTHER	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	7	118	-	-
	Pste1g00062	296	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	8	71	IPR003958	-
	Pste1g00062	296	MobiDBLite	consensus disorder prediction	168	190	-	-
	Pste1g00062	296	SUPERFAMILY	Histone-fold	4	96	IPR009072	GO:0046982
	Pste1g00062	296	MobiDBLite	consensus disorder prediction	110	130	-	-
	Pste1g00062	296	FunFam	dr1-associated corepressor homolog	1	86	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g00062	Pste-Chr1	282886	290987	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g00062	1	282	CCAAT-HAP5 Transcription Factor Family	AT3G12480	49.660	2.44e-77	236

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YC	Pste1g00062		CBFD_NFYB_HMF	2.2e-19	CL0012

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