LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g00032	GAGGTGGACAAAAGGACTTTTAACCATGATACATTTAGAAGTTAAAGAAACTTCTGTAACCTTGCTATGCTTATATTTTGCAAAATTTATGAGTAAAAATGAAGTTATTCTGAAAGCAAGGCAACAAATGCAGCAAAGTTTGTCTCACGGAGCTTCAAGTCCTAAATTGTCCAAAATGCTAGAAGTATTACTAGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTAATCATCTTCTCCAATTACAGAGAAAGCGTCCGGGATATAATGCATGCCCTTCGAGATGTTGAGGAATTAGTCAGAGCTACTGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTACTGAAGAAATTTCGTTCTGGTGCCTATAATGTCATTGTGGCTACATCAATTGGTGAAGAAGGTCTTGACATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTCAGAATGATTCAGCGAATGGGGAGAACTGGAAGAAAGCATGATGGACGAATTCCTCATGTCCTTAAACCAGAAGTTCAATATGCTGAGCTGTCCATTGAGAAATTTATTCCTCGTCAAAAGAATATGAAAGATGACGAGCTTCATATTTCTCCATCAAAGGACAAACTCACTATTGCTGAAATCGATTTACTTGGAACATATTTTCACTCTACTGGGGAAAACAATTGTAGAATGTCTCTTATTGCTTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTGAAGCATTCCTCTGGAACGTTGATGCTTATAGACATGATGCAGCGTTTGCAAGGACCAATATCATTTCCAGAAGATGACAAAACTTCACCTCAGGAAGATCTGTGTGTGGGACATAGTAAGCCAGTCACTACTACCAAACTTGAGGAAGCTATAAAAGAGCTGGATTCGTGTCATTTGGGGATTCAAAGCACAGACTTTGTTGATCTAACTCTACAATATGGTACTTTCTGTGACTTGGGTAAGAATCAAGAGGAAACATGTGAAGGTGATGAGACAATTCCTGAGACTCCAATTGCTAAGAGAAGTGTGCCAAATGAAGGAGATAATTCTGGTCAAATGATAAATCTTGTGGAGATTGAAACTTCTTCCTTGGATGTCGAAGCATGCGTTAATGGTATGAGAGATGAAGAACTTAGTCCACGTGTAACTAATTTTATTAGAAGTGGTGTTGTTCCTGAGTCTCCTATTGATGAAAGAGGAAGATCAAGATGCAATTCTGTCATACGTGATTGTATGCTACCTGTTGATCTCCACATAAAACAAGATGTTAGTTCTTTAAGCTTTAGGGAAACTAAAAAGTTTGTCATTGATAGGGGCACCGGTAAGACTGTCTATACCTCCCTTGTTAATGAAACCCAAACCCCTTTAATTGACCTGAAGAATCGTGCAATAAGAAGACGTGTCTTCTTGTCTCAAACTGAGGAAGGCCATACACATAACACTGACCCAAGCTTTAGTGAAGAAGCACTTCCAGCTGGTTGTGGTGAAATGCATGAAAGCTGTAAACCTGCACGCAAATTTAAAAGGTTGAGGAAAGGTGAAGATACTGAAAGTAATATGAATCAGGAAAAAAATGAACTTTTTGCGTCAGCAGCTAACTTTCTCAAATCATCTCCTGCCTCCAATCCCGTACAATATAAGCATGGCCAAGGTAAACGGAAATCAACACACAATGTGAGAGACTTTATTGACGAGGAAGCTGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGATGAGGATGGCAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAACGGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAAACACCAAGTAATGGAGGGCATAATTTTTCTGCCACCTTCACTCCTGACTGTGTGAATATGGAAGTCAGTGTCAGTGAAAGTGGGAATTCGTCAGGGAAGACAGTGAACCATTTCCATACAGAGCTAACCAAACAGTCAACTAATCGAACTTCAGAATCTGTTAGTATAAACCACATAACCTCAGAAGCACTGCCTTCAACTTGTTCTCTTACGGGAACTGGGACACAGATAAGAACTCGCAAACGAAGATTGACATTTTATAATTCAGGACACTTGCCAACTATGAACCTTGAAAGAGAATTTGCACTTCAATCAAAGGAATTAGTGGATGTAGATGTTCTGTGTGATGATCAATTTTATAATGACCTTGATCTTGACGAGTTGGAGGCGCAGGCAACTTTGCTTCTAAAACAGAAATTAGATTTGTCTATTCAGAAGCAAGATACAGTCCCTCAATCTCACTCTCACACACCCAACCTTGATATTTTCCAGTCTCCATCGTTTGACCTTGGGATATGAAAAGCAGGACATAAGCACTGATGCTGCTCGGCACTTACATTCTGGAAATTAATTAATCAATATGGTATAAGCTAGATACCAGAAATCTTATATATCACATATTTATAGTGTATTTTATTGTATAATTAAACCGGTTGGTTGGTGGGTGGAGCCAAGCTAGCTTAGTTCAGCAAATGACTGTTTGGAAGAGGAGAGGGTTAT	2650	0.3936	MIHLEVKETSVTLLCLYFAKFMSKNEVILKARQQMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMHALRDVEELVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRIPHVLKPEVQYAELSIEKFIPRQKNMKDDELHISPSKDKLTIAEIDLLGTYFHSTGENNCRMSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGPISFPEDDKTSPQEDLCVGHSKPVTTTKLEEAIKELDSCHLGIQSTDFVDLTLQYGTFCDLGKNQEETCEGDETIPETPIAKRSVPNEGDNSGQMINLVEIETSSLDVEACVNGMRDEELSPRVTNFIRSGVVPESPIDERGRSRCNSVIRDCMLPVDLHIKQDVSSLSFRETKKFVIDRGTGKTVYTSLVNETQTPLIDLKNRAIRRRVFLSQTEEGHTHNTDPSFSEEALPAGCGEMHESCKPARKFKRLRKGEDTESNMNQEKNELFASAANFLKSSPASNPVQYKHGQGKRKSTHNVRDFIDEEAEVSSDAYVSNDEDDEDGNSFDSFIDDRTNPTAASQPEASRTDMMAIYRRSLLSQTPSNGGHNFSATFTPDCVNMEVSVSESGNSSGKTVNHFHTELTKQSTNRTSESVSINHITSEALPSTCSLTGTGTQIRTRKRRLTFYNSGHLPTMNLEREFALQSKELVDVDVLCDDQFYNDLDLDELEAQATLLLKQKLDLSIQKQDTVPQSHSHTPNLDIFQSPSFDLGI	807

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g00032	807	MobiDBLite	consensus disorder prediction	580	621	-	-
	Pste1g00032	807	Pfam	Helicase conserved C-terminal domain	53	170	IPR001650	-
	Pste1g00032	807	FunFam	ATP-dependent RNA helicase, putative	34	201	-	-
	Pste1g00032	807	Gene3D	-	34	201	IPR027417	-
	Pste1g00032	807	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	47	215	IPR001650	-
	Pste1g00032	807	Coils	Coil	760	780	-	-
	Pste1g00032	807	PANTHER	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	18	175	-	-
	Pste1g00032	807	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	39	226	IPR027417	-
	Pste1g00032	807	MobiDBLite	consensus disorder prediction	604	619	-	-
	Pste1g00032	807	CDD	SF2_C_FANCM_Hef	45	175	-	-
	Pste1g00032	807	SMART	helicmild6	80	171	IPR001650	-
	Pste1g00032	807	MobiDBLite	consensus disorder prediction	553	572	-	-
	Pste1g00032	807	MobiDBLite	consensus disorder prediction	585	601	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g00032	Pste-Chr1	185925	202841	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g00032	20	169	Eukaryotic Initiation Factors Gene Family	AT3G13920	28.947	1.07e-08	56.2