Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00028 AGAAAATGAAGCAGAAATCAAAAGCATGGAGACCCTTGACGGCAAATTGCTGCTCCACAGAGGACCAAACGATTTTGAAAAACTTGAGCAGGTGCAAGCCATCACGTTCAGATTTGTCAAAGAACATTGCTCCTTTGCCATCATTTAGGAGGCTCTCATTCTCTGATCTCAGCCGTTCCTCATCCACGCGAATCAACGAAGATCTTGCGCAGTCATTTGGGTCGGATTTGTATGATTTTCAGCTGAGTGAACTGCGTGCCATAACACAGAATTTTAGCAGCAATTTCCTGCTGGGTGAAGGAGGGTTTGGAACTGTGCATAAGGGTTACATAGATGACAATTTGAGGCTCGGTTTCAAGGCACAACCTGTTGCTGTCAAACTTCTTGACATTGAAGGCTTACAAGGACACCGTGAATGGCTTGCAGAAGTGATTTTTCTTGGGCAGCTAAGACACCCTAATTTGGTTAAATTGATTGGGTATTGTTGTGAAGATGAAGAACGACTACTTGTCTATGAATTCATGCCACGAGGAAGCTTAGAGAATCACCTCTTCAGAAGGCTAACATCACTTCCATGGGGAACAAGATTGAAAATCGCAATAGGTGCTGCTAAAGGCCTTTCTTTCTTGCATGGAGCTGAGAAACCAGTCATTTATAGAGACTTCAAGACTTCCAATGTTTTGCTTGATTCAGTACGGCACCTGACCACCAAAAGTGATGTCTATAGCTTCGGGGTAGTCCTGCTGGAACTGCTCACAGGAAGAAGAGCAACGGACAAAACAAGACCAAAGACTGAGCAAAACCTTGTGGATTGGTCAAAACCTTACTTGAGTAGCAGTAGGAGGTTGAGGTACATTATGGATCCACGGCTTGCAGGCCAATATTCTGTGAAGGGTGCAAAGGAGATGGCCCATTTGGCATTGCAATGCATAAGTTTGAACCCTAAAGACAGACCAAGAATGGCAACGATTGTTGAAACTCTTGAAGGCTTGCAACAGTACAAGGACATGGCTGTCACCAGTGGACACTGGCCAGTGACATCAAAATCTACCAGGAATAGAGTCTCCAACACCAATAAGATGAATGAGAAGACTAGAGCCACTGCAAACCACAAACAACCTTCTCCAGTTCCGAGCAGAAAAACTTGATTCTACCTGCTCATATTGACCCAACTCGGTGTGGCAAAACCTCATGAAGGTCCACGAGTATATGTTCATTGTCGCATATGTTTTCCAGCATGAAGGTCCACGTGTATACGTGACGGTCGGGACTAAG 1275 0.4471 MKQKSKAWRPLTANCCSTEDQTILKNLSRCKPSRSDLSKNIAPLPSFRRLSFSDLSRSSSTRINEDLAQSFGSDLYDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYIDDNLRLGFKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWGTRLKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSVRHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNLVDWSKPYLSSSRRLRYIMDPRLAGQYSVKGAKEMAHLALQCISLNPKDRPRMATIVETLEGLQQYKDMAVTSGHWPVTSKSTRNRVSNTNKMNEKTRATANHKQPSPVPSRKT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00028 380 Pfam Protein tyrosine and serine/threonine kinase 96 229 IPR001245 GO:0004672|GO:0006468
Pste1g00028 380 Pfam Protein tyrosine and serine/threonine kinase 232 326 IPR001245 GO:0004672|GO:0006468
Pste1g00028 380 MobiDBLite consensus disorder prediction 341 380 - -
Pste1g00028 380 PANTHER OS01G0588500 PROTEIN-RELATED 61 229 - -
Pste1g00028 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Pste1g00028 380 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
Pste1g00028 380 Gene3D Transferase(Phosphotransferase) domain 1 232 342 - -
Pste1g00028 380 Gene3D Transferase(Phosphotransferase) domain 1 173 231 - -
Pste1g00028 380 Gene3D Phosphorylase Kinase; domain 1 52 172 - -
Pste1g00028 380 SUPERFAMILY Protein kinase-like (PK-like) 70 329 IPR011009 -
Pste1g00028 380 ProSiteProfiles Protein kinase domain profile. 90 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g00028 380 FunFam Serine/threonine-protein kinase BIK1 56 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00028 Pste-Chr1 173121 180547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00028 78 367 Glycoside Hydrolase AT3G07070 40.000 1.08e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pste1g00028 PK_Tyr_Ser-Thr 1.3e-23 CL0016