Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00005 ATGGCATCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCCGAGTGTGCATTTGCACCATATTTTCCCCCTGACCAGCCTCAAAAGTTTGCAAATGTTCATAGAATTTTTGGGGCAAGCAATGTCACAAAGCTTCTCAATGATTTGCACCCTCACCAACGTGAAGATGCTGTGAATTCTCTTGCTTATGAAGCCGAAATGCGCCTCCGAGACCCTGTGTATGGTTGTGTAGGGGTGATATCACTCCTTCAGCACCAGCTTCGTCAGCTTCAAATGGATCTCTATTGTGCGAAATCTGAGCTTTCTAGGTACCAAACCACTAATCACGGTCTCATCGCGACCGAATCAGCAGCGACATATCACCACCATCAGCATCAACACCAGAACAACACCGTTGGTATTAGTGCTAGTGGTGGTTTTAGCCGTGATCATCATTACCATCATTACCATCATCACCACCAGTTTTTTCCCAGGGAACAACAAGTGATAAGAGGCTTTGACGGTGGTGGTAACAACTATGACACAAGCAGCCTCTTGGCCATGAACATTTCTGCCAGCTTAGGGCAACTCAACCATCTTCAAAGTGCTGCTGGTGGGGGTGATGACCGCCACAATCGCACCTAG 642 0.4735 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQTTNHGLIATESAATYHHHQHQHQNNTVGISASGGFSRDHHYHHYHHHHQFFPREQQVIRGFDGGGNNYDTSSLLAMNISASLGQLNHLQSAAGGGDDRHNRT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00005 213 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pste1g00005 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 148 - -
Pste1g00005 213 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00005 Pste-Chr1 30928 31569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00005 2 211 AS2 family AT1G65620 61.033 8.45e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste1g00005 LOB 2.9e-42 No_clan