Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste10g00103 GTTTTAACTTTATTCATTCTGTTTGATATGATTCTGATTCGGGATTTTAATCAGATCTCTTCTGTTCCGTTGCCTAAGTTTTGCTGGAATATTCGCTTGGCTTTTTATTTCTTTCTGGAGTCATTCATATGTTTTTTGTGCCCTGATAGATTAATAGATGAAACGTTTTGGGGAAGTTTAGAGGTTCTTTTGATTTCGAGGGACCCAAATAAGTTTTTTAAGGCTATAAGAATTCCAACTACTTCAGCGCGTGGAAATAAATTTTTGTACATGTTTAATTTTATAATTGTGTATCTATCTGTCTCGTCGGGCTTTCCATTTCTGGTGGATTTAGCTTCCTATTTTTTAATTCAATTATTTCATTGGTTTGTTATTACATTCCTTTTTTATCGTTGTCCAGCTAACCGCAGCATGTGCGGTGTTCCAGAGAAATCAAGGTCTCTTTCAGCTCCATCTTCATCTGTGGTAGTAGGTTCAACTAACGTCAAAGAGATGAAAAATCTAACGGTCCATGCTGAAGATTCTTTTTCTTGCTTACTTGAGCTTGCTTCTAACAATGAATTTGAAGATTTTAAGCTAGCTTTAGATGGGGATGTTTCTCTAATAAATGAAGCTGGCCTGTGGTATGTCCGGCAAAGTGGATCTAAACAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTAAAACTTATACTTTGTTGTCCAGAGGCTGATGTAAATCTCTCATGTGGGGCAAATAAAAGCACTGCCCTGCACTGTGCTGCATCAGGGGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTATCAGCTGGTGCTGATATCAATTGTGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTATTCATCCTAAGATTGTTGCTCTGAAAGCAACTCTTGAAGATCTACTTTCTGAAAGTGCTTGTAATGGTTCTGTTGGAGACTGTTTTATTCCAGTATCAGTTAATTCATCATGTTCTGATTCAGCTGGTCATTTGCCTGAGAACGGGATGCCATCCTCTCCCATGGCATCAAAGTTTACTGAAGCAGCTGTTAGTTTTGCATCTGAGAAGAAAGAATATCCGATTGATCCATCGCTTCCAGATATAAAGAACAGCATCTATGCCACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGGGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCCGGAGAGAATGCACGGAGGAGGGACCCCAGAAAGTTCCACTACAGCTGCGTACCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGGGGAGACATGTGTGAATATGCACATGGAGTATTTGAGTGCTGGCTACACCCTGCTCAATATCGGACCAGGTTATGCAAAGATGGTACTAGTTGCAATAGAAGGGTATGCTTTTTTGCCCACACAGCTGAAGAGCTGCGGCCATTATATGTGTCCACTGGATCTGCTGTTCCTTCGCCCCGCTCAGCTGTCTCTACTCCTAATGTCATGGACATGGCAGCTGCAATGAGCCTCTTTCCTGGTTCACCATCATCAATTTCTTCCATGTCTCCATCGCCCTTTGCACAGCCAATGTCTCCTTCTGCAAGTGGCATTTCTCACTCATCTGCTTGGCCCCAGCCAAATGTCCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGATTGAGATCTTCTCTTAATGCTCGTGACATGGCACCTGAAGACTTGGATTTGTTGCAAGATTTTGATGGTCAGCAACACCTTTTGAATGAATTGGGCTGTTTCTCGCAGCCTCGTCCAGGTGCCATTTCAGTGAGTCGATCTGGTCGGTCCAAGACACTGACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCATCTCCTCGGTATTCTGACCCAGCAGCAGCTTCTGTATATTCCCCAACGCACAAGTCAGCTATTTTGAATCAGTTTCAGCAGCTTCAAAGTTCGTTATCACCCATAAATACAAGTGTTTCGTCTCCTAGGAATGTTGAACATCCTCTTTTACAGGCTTCATTTGGTGTCTCTTCACCTGGAAGGATGTCACCAAGGAGTATGGAACCAATATCTCCCATGAGCTCCCGACTATCTGCATTTGCGCAACGTGAGAAAATGCACCAACAACTGCGAAGCCTTAGTTCAAGGGACCTTGGTGCAAATAATCCCATGTCAATTGTTGGGTCCCCTGTGAATTCCTGGTCTAATTGGGGATCTCCTCGTGGAAATGGGAAAGTAGATTGGTCAGTGAATGGAAATGATCTTGGTTGTTTGCAAAGATCATCCTCATTTGATCTTCGAAACAATGGAGAGGAGCCTGATTTATCCTGGGTTCAGTCCCTCGTCAAGGAATCTCCTTCCGAGATAAAAGAAAAGTTGGCAGGTTCTGGTCCTGTTGCTTCTGCTGATGAACTGAATTCCAATCCCCAAGTTGATTCTATTGATCATTCTGTAGTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2577 0.4253 VLTLFILFDMILIRDFNQISSVPLPKFCWNIRLAFYFFLESFICFLCPDRLIDETFWGSLEVLLISRDPNKFFKAIRIPTTSARGNKFLYMFNFIIVYLSVSSGFPFLVDLASYFLIQLFHWFVITFLFYRCPANRSMCGVPEKSRSLSAPSSSVVVGSTNVKEMKNLTVHAEDSFSCLLELASNNEFEDFKLALDGDVSLINEAGLWYVRQSGSKQIVLEHRTPLMVAAMYGSIDVLKLILCCPEADVNLSCGANKSTALHCAASGGSVNAVDVVKLLLSAGADINCVDANGNRPVDVIVIHPKIVALKATLEDLLSESACNGSVGDCFIPVSVNSSCSDSAGHLPENGMPSSPMASKFTEAAVSFASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSAVSTPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPMSPSASGISHSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMAPEDLDLLQDFDGQQHLLNELGCFSQPRPGAISVSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAASVYSPTHKSAILNQFQQLQSSLSPINTSVSSPRNVEHPLLQASFGVSSPGRMSPRSMEPISPMSSRLSAFAQREKMHQQLRSLSSRDLGANNPMSIVGSPVNSWSNWGSPRGNGKVDWSVNGNDLGCLQRSSSFDLRNNGEEPDLSWVQSLVKESPSEIKEKLAGSGPVASADELNSNPQVDSIDHSVVGAWLEQMQLDQLVV 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste10g00103 858 Pfam CCCH-type zinc finger 437 457 IPR041367 -
Pste10g00103 858 SMART c3hfinal6 467 490 IPR000571 GO:0046872
Pste10g00103 858 SMART c3hfinal6 432 458 IPR000571 GO:0046872
Pste10g00103 858 ProSiteProfiles Ankyrin repeat profile. 256 291 IPR002110 GO:0005515
Pste10g00103 858 SUPERFAMILY Ankyrin repeat 174 302 IPR036770 -
Pste10g00103 858 PRINTS Ankyrin repeat signature 222 237 IPR002110 GO:0005515
Pste10g00103 858 PRINTS Ankyrin repeat signature 275 289 IPR002110 GO:0005515
Pste10g00103 858 SMART ANK_2a 221 251 IPR002110 GO:0005515
Pste10g00103 858 SMART ANK_2a 256 288 IPR002110 GO:0005515
Pste10g00103 858 Pfam Ankyrin repeats (3 copies) 211 290 IPR002110 GO:0005515
Pste10g00103 858 MobiDBLite consensus disorder prediction 537 556 - -
Pste10g00103 858 FunFam Zinc finger CCCH domain-containing protein 66 390 458 - -
Pste10g00103 858 ProSiteProfiles Ankyrin repeat region circular profile. 256 290 - -
Pste10g00103 858 Gene3D - 151 343 IPR036770 -
Pste10g00103 858 PANTHER UNKEMPT FAMILY MEMBER 200 810 IPR045234 -
Pste10g00103 858 Gene3D - 432 495 - -
Pste10g00103 858 ProSiteProfiles Zinc finger C3H1-type profile. 437 459 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste10g00103 138 855 C2H2 Transcription Factor Family AT5G12850 52.688 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste10g00103 Ank_2 6.1e-10 CL0465