Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g6000 ATGGACAAGTACGAAAAAATCGAGAAAGTAGGAGAAGGAACCTACGGCAAAGTCTACAAAGCCAAAGAAACCTCCACCGGCCAAATCGTCGCCCTCAAAAAAACCCGTCTCGAAATGGACGAAGAAGGTGTTCCCCCAACCGCCCTCCGCGAAGTTTCTCTCCTTCAAATGCTCTCTCAATCTCTCTACATCGTCCGCCTCCTCAACGTCGAACACGTCGATAAAATCCCCAAATCCGGCACCAATTCAACCCCTAAGCCTATTCTCTATCTCGTTTTCGAGTATCTCGACACCGATCTGAAGAAATTCATTGATACTTTTCGTAAAGGAGCGAACCCTAGGCCAGCTCCGGAGGTTTTGCTTGGATCTACTACTTACTCTACTGGAGTTGATATCTGGTCTGTTGGATGTATATTTGCTGAAATGGTGAGGAGACAGGCTTTGTTTCCGGGGGATTCTGAATATCAGCAGCTTCTTAACATATTCAAGCTTATGGGGACTCCAACAGAGCAGCAATGGCCAGGAGTTAGCTCTTTGCGTGATTGGCATGTGTACCCAAGGTGGGAGCCTCAGAACTTGACAAGAGCTGTGCCCTCTTTGTCACCTGAAGGAGTGGACCTTCTCTCGAAAATGCTCAAGTATAATCCCTGTGAGAGAATATCAGCCAAAGCAGCACTTGATCATCCCTACTTTGACAGTCTTGACAAGTCTCAATATTAA 720 0.4667 MDKYEKIEKVGEGTYGKVYKAKETSTGQIVALKKTRLEMDEEGVPPTALREVSLLQMLSQSLYIVRLLNVEHVDKIPKSGTNSTPKPILYLVFEYLDTDLKKFIDTFRKGANPRPAPEVLLGSTTYSTGVDIWSVGCIFAEMVRRQALFPGDSEYQQLLNIFKLMGTPTEQQWPGVSSLRDWHVYPRWEPQNLTRAVPSLSPEGVDLLSKMLKYNPCERISAKAALDHPYFDSLDKSQY* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g6000 239 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Psa7g6000 239 PANTHER CYCLIN-DEPENDENT KINASE B1-2 116 239 - -
Psa7g6000 239 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 115 - -
Psa7g6000 239 Pfam Protein kinase domain 116 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g6000 239 Pfam Protein kinase domain 4 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g6000 239 Gene3D Transferase(Phosphotransferase) domain 1 95 239 - -
Psa7g6000 239 ProSiteProfiles Protein kinase domain profile. 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g6000 239 PANTHER CELL DIVISION PROTEIN KINASE 116 239 - -
Psa7g6000 239 PANTHER CELL DIVISION PROTEIN KINASE 1 115 - -
Psa7g6000 239 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Psa7g6000 239 SUPERFAMILY Protein kinase-like (PK-like) 1 234 IPR011009 -
Psa7g6000 239 SMART serkin_6 4 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g6000 Psa-Chr7 489267795 489270335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g6000 1 239 Core Cell Cycle Gene Families AT2G38620 62.992 8.99e-104 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Psa7g6000 Pkinase 1.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g6000 K07760 - mnt:21405571 325.094