Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5980 ATGACTACCTCCTCCAACGGCCATCTCACCGTTAACATCGCCGCCGGTCACCATGACAACGACGATAACAACAATGCTCCACCTCCTCCCGATAACAGCAATAACGACCAGCATGTTAATGACGATGACGACGACGAAGAACTCATCGATCCTGATGATCCTTTCGATATTACTCAAACTAAGAATGCTTCTCACGAGAGTCTTCGCCGTTGGAGACAAGCAGCACTGGTGCTCAATGCTTCCAGGCGTTTTAGATATACACTGGACTTCAAAGGGGAAGAAGAAAAACAGCAAAAGAAGAGCTTAATTAGAGCCCATGCACAAGTCATAAGAGCTGCACTGCTTTTTAGATTGGCTGGTGAACGTGAACTAGTGATAAGTCCAGAAGCTACACCCCCACATCAAACTTCACTTGGTGACTATGGAGTTGGTCTAGAAGAACTTGCTTCGATGTCTAAAGATCAGAATATTTCTGCTTTACAGCAATTAGGAGGGGTTAAAGGCCTTTCAAATTTACTAAAGTCAAATCCAGATAAAGGAATTAGTGGAGATGATGATGATCTACTGAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTTTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTGATTATAGCAGCTGCAGTGTCATTGGTACTTGGAATAAAAACAGAGGGTTTGGAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTACTTGTTATTGTAGTAACAGCTGTCAGTGATTATCGACAATCTCTGCAATTTCAGAATCTGAATGCAGAGAAACAAAATATACAATTAGAGATCATTAGAAGTGGAAGAACAATTAAAATATCAATATTTGATATTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTTCCTGCCGACGGAGTATTAATCATAGGTCACTCACTTGCAATTGATGAATCTAGTATGACTGGTGAAAGCAAAATTGTTCATAAGGATCACAAAGCACCTTTTTTTATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGTTATGCTGGTAACTGGTGTTGGTATTAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGACACTGGAGAAGAGACTCCGTTACAGGTACGTTTAAATGGAGTGGCAACTTTTATCGGTATAGTTGGGCTTAGTGTAGCTGTTTTAGTGCTCGCAGTCCTCTTGGGCAGATACTTTTCTGGCCACACAAATGATTTAGATGGAAATCCCGAATTTGTTGCTGGAAGGACTGCCATTAGTCATGCAGTTGATGATGTCATCAAAATTTTTACCATTGCAGTCACAATTGTAGTTGTTGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACTTTAACCTTGGCATATTCAATGCGGAAAATGATGGCAGATAAAGCCTTGGTACGAAGACTGTCAGCCTGCGAAACTATGGGCTCTGCTACTACAATCTGTAGTGATAAGACAGGAACATTAACCTTAAATCAGATGACTGTTGTTGAGGCATATGTTGGGAGGAACAATCTAAATCCACCAGATGACTCTTCAAAGTTTCATCCAGAAGCATTATCCCTGATAAATGAAAGCATTGCACAGAATTCCACTGGAAATGTTTTTGTGTCTAAGGATGGTGGAGCGGTAGAGGTTTCAGGATCACCAACAGAGAAGGCGATTCTTTCATGGGCAGTCAAGTTGGGTATGAATTTTGATCTTACCAGATCTAGTTCGACAGTTCTTCACGTCTTTCCATTCAATTCCGAGAAAAAACGAGGCGGTGTTGCTCTGAAGCTGGCGGACTCTGGAGTGCATATACACTGGAAAGGAGCTGCAGAAATAGTTCTAGGAGCATGTAACCAATATCTTGATTCAAATGGTCATTCAGGCGGACTCTGGAGTGCATATACACTGGAAAGGAGCTGCAGAAATAGTTCTAGGAGCATGTAA 2007 0.4145 MTTSSNGHLTVNIAAGHHDNDDNNNAPPPPDNSNNDQHVNDDDDDEELIDPDDPFDITQTKNASHESLRRWRQAALVLNASRRFRYTLDFKGEEEKQQKKSLIRAHAQVIRAALLFRLAGERELVISPEATPPHQTSLGDYGVGLEELASMSKDQNISALQQLGGVKGLSNLLKSNPDKGISGDDDDLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEIIRSGRTIKISIFDIVVGDVIPLKIGDQVPADGVLIIGHSLAIDESSMTGESKIVHKDHKAPFFMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVLVLAVLLGRYFSGHTNDLDGNPEFVAGRTAISHAVDDVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRNNLNPPDDSSKFHPEALSLINESIAQNSTGNVFVSKDGGAVEVSGSPTEKAILSWAVKLGMNFDLTRSSSTVLHVFPFNSEKKRGGVALKLADSGVHIHWKGAAEIVLGACNQYLDSNGHSGGLWSAYTLERSCRNSSRSM* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5980 668 PANTHER CATION TRANSPORTING ATPASE 59 647 - -
Psa7g5980 668 Pfam Ca2+-ATPase N terminal autoinhibitory domain 52 93 IPR024750 GO:0005516
Psa7g5980 668 Gene3D - 63 117 - -
Psa7g5980 668 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Psa7g5980 668 PRINTS P-type cation-transporting ATPase superfamily signature 506 520 - -
Psa7g5980 668 SUPERFAMILY Calcium ATPase, transduction domain A 284 379 IPR008250 -
Psa7g5980 668 SMART Cation_ATPase_N_a_2 165 236 IPR004014 -
Psa7g5980 668 Gene3D - 361 531 - -
Psa7g5980 668 ProSitePatterns E1-E2 ATPases phosphorylation site. 508 514 IPR018303 -
Psa7g5980 668 Pfam Cation transport ATPase (P-type) 561 640 - -
Psa7g5980 668 Gene3D - 168 360 - -
Psa7g5980 668 PANTHER CALCIUM-TRANSPORTING ATPASE 9, PLASMA MEMBRANE-TYPE 59 647 - -
Psa7g5980 668 Pfam Cation transporter/ATPase, N-terminus 164 231 IPR004014 -
Psa7g5980 668 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 512 646 IPR023299 GO:0000166
Psa7g5980 668 MobiDBLite consensus disorder prediction 13 44 - -
Psa7g5980 668 Pfam E1-E2 ATPase 284 484 - -
Psa7g5980 668 SUPERFAMILY Calcium ATPase, transmembrane domain M 164 500 IPR023298 -
Psa7g5980 668 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 442 530 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa7g5980 668 PRINTS Sodium/potassium-transporting ATPase signature 249 269 - -
Psa7g5980 668 PRINTS Sodium/potassium-transporting ATPase signature 499 520 - -
Psa7g5980 668 PRINTS Sodium/potassium-transporting ATPase signature 625 643 - -
Psa7g5980 668 Gene3D - 549 663 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5980 Psa-Chr7 488861087 488869689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5980 1 646 Primary Pumps ATPases AT3G21180 71.406 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5980 K01537 - gmx:100777143 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5980 7 488861087 488869689 Psa7g5980 7 488861087 488869689 ECH