Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5975 ATGGATGGTATTCATGGGGATGATTCGCGAATGCAGACCAATGATGGACAGCATACTATACATATGTCATATGAACATCACGGATTGCACCATATGAGCAATGGGGATGGGATGGATGATGATCAAAACAACGGTGGTGGTGGTGATTCTAACTGCGGTGGAAGTGAAAATGCCGAAGTTGAAGTACCCTCCAACAATGGGAATCTTCATGACAATCAAAGTTTAATAATGGATCAAGGGAATAATGATATTGGAGATCAGCTTAGTTTGTCTTTTCAAGGGCAGGTTTATGTCTTTGACTCGGTGTCACCAGAAAAGGTTCAATCTGTACTTCTGTTACTCGGAGGCCGTGAACTACCTCCAACCTTACCTTCCATGCCAATTTCTCCTGACGAAAATAACCGGGGATTTACTGGTACTCCACAAAAATTCAGCGTCTCTCAAAGATTAGCTTCATTGATTAGATTTCGTGAAAAGCGGAAAGAGCGAAATTTTGACAAAAAAATTCGTTATACTGTTCGCAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGGCAGTTTACATCTTCCAAGTCCAATCATGATGAGTCTGAAATAAATTGCGGGACAAATGAAGGGTTGATGGCAGACAATAATGGATCCCAACAGCAAGATACTGTTTGTAGGCACTGTGGCATCAGTGAGAAGTGCACGCCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAGCTCTTAGGGACCGATCAAGGGCCGCAACCTTGCCAGCACACAATTCTCCATTGAACAAGAATGAGAGTCAAAATTTGGAGAACAATCAGATAGTGCTTAGAGATGCTGCTGAATCATCATGA 894 0.4273 MDGIHGDDSRMQTNDGQHTIHMSYEHHGLHHMSNGDGMDDDQNNGGGGDSNCGGSENAEVEVPSNNGNLHDNQSLIMDQGNNDIGDQLSLSFQGQVYVFDSVSPEKVQSVLLLLGGRELPPTLPSMPISPDENNRGFTGTPQKFSVSQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESEINCGTNEGLMADNNGSQQQDTVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGALRDRSRAATLPAHNSPLNKNESQNLENNQIVLRDAAESS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5975 297 ProSiteProfiles CCT domain profile. 149 191 IPR010402 GO:0005515
Psa7g5975 297 Pfam CCT motif 149 191 IPR010402 GO:0005515
Psa7g5975 297 PANTHER GATA TRANSCRIPTION FACTOR 28 12 284 IPR045280 GO:0006355
Psa7g5975 297 Pfam GATA zinc finger 222 257 IPR000679 GO:0006355|GO:0043565
Psa7g5975 297 SMART tify_2 81 116 IPR010399 -
Psa7g5975 297 Pfam tify domain 87 115 IPR010399 -
Psa7g5975 297 CDD ZnF_GATA 221 263 IPR000679 GO:0006355|GO:0043565
Psa7g5975 297 ProSitePatterns GATA-type zinc finger domain. 222 249 IPR000679 GO:0006355|GO:0043565
Psa7g5975 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 278 - -
Psa7g5975 297 SMART GATA_3 216 269 IPR000679 GO:0006355|GO:0043565
Psa7g5975 297 PANTHER GATA TRANSCRIPTION FACTOR 28 12 284 - -
Psa7g5975 297 Gene3D - 212 278 IPR013088 GO:0006355|GO:0008270
Psa7g5975 297 ProSiteProfiles Tify domain profile. 81 116 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5975 Psa-Chr7 488750731 488754266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5975 1 294 Tify Gene Family AT1G51600 60.333 2.00e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa7g5975 CCT 8.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5975 - - pvu:PHAVU_008G254600g 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5975 7 488750731 488754266 Psa7g5975 7 488750731 488754266 ECH