Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5962 ATGGCAAAGAGATCTCATACTTCTTCTTCTTCTTCTTCTACCACCATGGTGAAACGTAAACGTAAAAGCATCCCAAGAAACTCACCTCCACAAAGAAGCTCCATTTATAGAGGTGTCACAAGACATCGTTGGACAGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATCAATCACAAAGCAAGAAAGGAAGACAAGTATATCTAGGGGCTTATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGCCACAATTCTCAACTTTCAAGTATCAAATTATGAGGAGGAGGTGAAAGAAATGGAAGGACAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGCAGTGGATTTTCAAGAGGAGTGTCAAAATACAGAGGTGTGGCAAGACACCACCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTCTTTGGCAACAAATACTTATACCTTGGAACTTATGCTACACAAGAAGAAGCAGCCATAGCATATGACATGGCAGCAATAGAATACAGAGGACTTAACGCCGTTACGAATTTTGATCTTAGCCGTTATATCAATAACGATAACAACAACAATCATAATCAAAACCCTAGCAATAATAATCAAGAGCTGGATCTTAATCAAGAAATTGTTGAAGGTGGTGACACGTCAACAACATCTTCAGCCGTTGATTTTATCATAAACTCGTCAAAATTCAAAGAAATGTTAGAAAATACCACGTCGTCGTCATCGGTGGAAGATAGTTACACTCCACCGCTTGTTGAGTCAATTCCGCCGCATCGGAATTTTCCTGAAGATATTCAAACAATCTTTGAAACGCAATATTCAAGTATCTACAATGAGAATGATGATGACTTGATATTTGGGGACTTGACCTCAATTGATGCACCAATTTTTCATTATGGACTTGATGCTTGA 963 0.3915 MAKRSHTSSSSSSTTMVKRKRKSIPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNQSQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQATILNFQVSNYEEEVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDMAAIEYRGLNAVTNFDLSRYINNDNNNNHNQNPSNNNQELDLNQEIVEGGDTSTTSSAVDFIINSSKFKEMLENTTSSSSVEDSYTPPLVESIPPHRNFPEDIQTIFETQYSSIYNENDDDLIFGDLTSIDAPIFHYGLDA* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5962 320 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 1 305 - -
Psa7g5962 320 SUPERFAMILY DNA-binding domain 136 197 IPR016177 GO:0003677
Psa7g5962 320 Gene3D AP2/ERF domain 35 103 IPR036955 GO:0003700|GO:0006355
Psa7g5962 320 Gene3D AP2/ERF domain 136 197 IPR036955 GO:0003700|GO:0006355
Psa7g5962 320 MobiDBLite consensus disorder prediction 1 38 - -
Psa7g5962 320 MobiDBLite consensus disorder prediction 1 18 - -
Psa7g5962 320 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Psa7g5962 320 Coils Coil 95 115 - -
Psa7g5962 320 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 305 - -
Psa7g5962 320 ProSiteProfiles AP2/ERF domain profile. 35 101 IPR001471 GO:0003700|GO:0006355
Psa7g5962 320 CDD AP2 136 197 IPR001471 GO:0003700|GO:0006355
Psa7g5962 320 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
Psa7g5962 320 SMART rav1_2 35 107 IPR001471 GO:0003700|GO:0006355
Psa7g5962 320 Pfam AP2 domain 136 187 IPR001471 GO:0003700|GO:0006355
Psa7g5962 320 Pfam AP2 domain 35 93 IPR001471 GO:0003700|GO:0006355
Psa7g5962 320 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Psa7g5962 320 PRINTS Ethylene responsive element binding protein signature 177 197 IPR001471 GO:0003700|GO:0006355
Psa7g5962 320 SUPERFAMILY DNA-binding domain 34 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5962 Psa-Chr7 488614960 488620545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5962 31 199 AP2-EREBP Transcription Factor Family AT5G57390 73.373 3.06e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa7g5962 AP2 6.7e-13 CL0081