Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5949 ATGGATACTACTACAAAACACAAACATGAATCATCTTCTCAACTTGTACTTGATCTAAGTCTCTCTAGCAAAGATTCATGCGAGGATGAATCAAAGCCGGAACTAAACCTCCTCAACTGTTTCCATGCGAATTTATCAGAAAGCTCGTCGGAATCTAGTCATGAAAATGAACTTGATCCAAGAGTTTTCTCATGCAACTACTGTCAAAGAAAATTCTATAGCTCGCAAGCACTAGGAGGACACCAGAACGCGCATAAGCGCGAAAGAACTTTGGCGAGAAGAGGCTATACAACTAGCATGCCTTCTTCTCTTCCTTCTTATGGCTTATGCAACAAATCACTTGGCATTCAAGTGCATTCTATGATTAACAAACCTTCTTATCAAACACAAACACAAACACCCTTTTTTGGATATTGTTCAAATGGACAAAATGGTTGGAAAAGACAGATTTTTGATTCACAACCAGCAATTGGAAAGCCTCCATCTGGAAACTTTCATGTGAGGAATGAAACTGAACCATCTTTTGGCAGTGGCATTCAAAGGGTAGCTATGTTTCCTAAAAGTCTTGTGAATGAAGGATTTGGACTTGGAGGTTACTTATTGGATAACAGCATTTCACATTTGAAGTCTAAACAAGACAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 675 0.3896 MDTTTKHKHESSSQLVLDLSLSSKDSCEDESKPELNLLNCFHANLSESSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMPSSLPSYGLCNKSLGIQVHSMINKPSYQTQTQTPFFGYCSNGQNGWKRQIFDSQPAIGKPPSGNFHVRNETEPSFGSGIQRVAMFPKSLVNEGFGLGGYLLDNSISHLKSKQDKLQKLDLSLKL* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5949 224 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Psa7g5949 224 Gene3D Classic Zinc Finger 42 103 - -
Psa7g5949 224 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 224 IPR044246 GO:0009788
Psa7g5949 224 SUPERFAMILY beta-beta-alpha zinc fingers 60 90 IPR036236 -
Psa7g5949 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Psa7g5949 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5949 Psa-Chr7 488202255 488204116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5949 1 224 C2H2 Transcription Factor Family AT5G10970 36.475 5.50e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g5949 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5949 - - mtr:MTR_4g006575 312.383