Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5946 ATGGACAATGAGGAAATCCCATCAGTACCTTCTACTCCAGCAACACCAGGTACTCCTGGTGCTCCTCTTTTTGGTGGATTCAAATCTGAAAGACATGGAAGTGGTAGAAACAACTCATTACTCAAGAGTTTGAAATGTTTTAATGTTCAAGAATGGACTTTGGAGGATGGTGCCTTACCTAAAGTCTCTTGCTCTTTGCCTCCTCCTCCCGTTCCTCTCGCCAAAAAGGTTGGAGCAGAGTTTATAGGCACATATATTCTAATGTTTGCTGGAATAGCCACTGCAATTGTGAACCAAAAGACACATAATTCAGAGACACTAATTGGATGTGCTGGAGCTACTGGACTTGCTGTTATGATCATTATTTTATCAACCGGTCATATTTCTGGTGCTCATCTCAATCCTGCTGTCACCATTTCATTCGCCGCATTAAAGCACTTTCCTTGGAAAAATGTGCCTTTGTATATTGGTGCACAAATTCTGGCTTCAATATGTGCTGCATTTAGTCTGAAAGGAGTTTTTCATCCATTCATGAATGGTGGTGTCACTGTTCCTTCAGTTGAATATGGCCAAGCTTTTGCTTTAGAGTTCATTATCAGCTTTAATCTCATGTTTGTTGTCACTGCAGTTGCAACCGACACAAGAGCTGTGGGAGAGCTTGCGGGAATCGCGGTGGGAGCCACCGTCATGCTCAACATACTCATTGCTGGGCCTGCAACTGGAGGTTCAATGAATCCAGTAAGAACATTGGGCCCAGCAATTGCTGCAAACAACTACAAAGGCATATGGCTATATATCATAGCTCCTATTCTTGGAGCTTTAGCTGGGGCAGGTGCCTACACTGCTGTTAAACTCCCTGATGAAGATTTTAACTCTGAAGTAAAAGCCTCTTCTGCCCCTGGAAGCTTTAGGAGATGA 918 0.4336 MDNEEIPSVPSTPATPGTPGAPLFGGFKSERHGSGRNNSLLKSLKCFNVQEWTLEDGALPKVSCSLPPPPVPLAKKVGAEFIGTYILMFAGIATAIVNQKTHNSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKNVPLYIGAQILASICAAFSLKGVFHPFMNGGVTVPSVEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGGSMNPVRTLGPAIAANNYKGIWLYIIAPILGALAGAGAYTAVKLPDEDFNSEVKASSAPGSFRR* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5946 305 Gene3D Glycerol uptake facilitator protein. 70 295 IPR023271 -
Psa7g5946 305 MobiDBLite consensus disorder prediction 1 20 - -
Psa7g5946 305 SUPERFAMILY Aquaporin-like 72 292 IPR023271 -
Psa7g5946 305 Pfam Major intrinsic protein 73 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5946 305 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5946 305 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5946 305 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5946 305 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5946 305 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5946 305 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5946 305 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Psa7g5946 305 PANTHER AQUAPORIN NIP2-1 3 292 IPR034294 -
Psa7g5946 305 CDD MIP 75 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa7g5946 305 PANTHER BNAA02G36290D PROTEIN 3 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5946 Psa-Chr7 488047315 488049653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5946 1 305 Major Intrinsic Protein MIP AT1G80760 75.806 1.15e-162 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5946 K09874 - qsu:112009900 432.18