Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5934 ATGGCAAGACCTCAACAACGTTATCGAGGTGTTAGACAAAGGCATTGGGGTTCTTGGGTCTCCGAAATTCGTCATCCTTTACTGAAAACAAGAATATGGTTAGGAACATTTGAAACAGCAGAAGATGCAGCAAGAGCTTATGATGAAGCAGCAAGATTAATGTGTGGACCAAAAGCACGTACAAATTTCCCATACAATCCAAATGGACCACAATCTTCTTCATCTAAGCTTCTTTCACCAACTTTAACTGCAAAGTTAAATAAATGTCACATGGCTTCTCTTTCTCTTCAAATGTCCAAACAACCTCAAAAAGAGACACAACAACATGTTTCAACACAAAGTTTCAGTTCTTGTTCTATTAATAGTAATAATAGCAGTTTTGTTTATGGTAATGATGACATTGGTGGTGGAACAAGTGGTGAAAGTGGTTTAATTAGATGGCTTGATGAAGGGAATAGTTTTGTTGGTTTTGAAAGTCATCATGTTGAAGTTTCTCATCAGCAATTTCAACCTGTTCTTGAAGATGATCATATTGAACAAATGATTCAAGAGTTGCTTGATTCTGGTTGCTCAATCGAGCTTTGCTCCGTCGGTTCATCTTAG 603 0.3731 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSPTLTAKLNKCHMASLSLQMSKQPQKETQQHVSTQSFSSCSINSNNSSFVYGNDDIGGGTSGESGLIRWLDEGNSFVGFESHHVEVSHQQFQPVLEDDHIEQMIQELLDSGCSIELCSVGSS* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5934 200 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 196 - -
Psa7g5934 200 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Psa7g5934 200 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Psa7g5934 200 PANTHER ETHYLENE RESPONSE FACTOR 1 196 - -
Psa7g5934 200 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Psa7g5934 200 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Psa7g5934 200 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Psa7g5934 200 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Psa7g5934 200 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Psa7g5934 200 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5934 Psa-Chr7 487711874 487713404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5934 1 197 AP2-EREBP Transcription Factor Family AT5G25190 61.929 1.50e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa7g5934 AP2 8.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5934 - - gmx:100527365 243.047