Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5918 ATGAATATTGAAAACTTCTCATACAACCCCACAACAACAACCACCACCACAACCTTAAATCTTCCGAAACACAACCCATACTTTTCATTTCATCAAACATCTCTCGAAGGAATCGCCGCGGTTGTCGGAGAACAAATCCTCTTCGGACCCCACACCAACACCAATACGACACCATCCAACACCGTTTCACACCCCAAAAACACAACAACAGAACCAACAAAAATCAACACCATTCCATTAAACAAGAACTACAGAGGAGTTAGAAAACGACCATGGGGAAGATGGTCAGCGGAAATACGCGACAGAATCGGTCGGTGCCGTCACTGGCTAGGAACATTCGACACGGCTGAAGAAGCGGCGCGTGCTTACGACGCAGCAGCTAGGCGACTGAGAGGCTCTAAGGCTAGAACAAATTTTAAGATACCCTCGGTTTTTCCCATACCGTTATCACCAAACTCGAATGAGTCCTGTTCTTCTTCTGAAACTAACGGTAAGAAAAAAGCTGTGCGTAACAGTGTTAGGAAGTGTTGTGTTGTTAGTTCTGTTGGAGAGTTGTTCAGTGGTGTACCTGAGGTTAGAAGAGAAAGGGATAGTAATGGTAATGTAGTTAAGTTTGGTGGTAGAAACAGTACTGGAATGGTGGTGTAG 648 0.4491 MNIENFSYNPTTTTTTTTLNLPKHNPYFSFHQTSLEGIAAVVGEQILFGPHTNTNTTPSNTVSHPKNTTTEPTKINTIPLNKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVFPIPLSPNSNESCSSSETNGKKKAVRNSVRKCCVVSSVGELFSGVPEVRRERDSNGNVVKFGGRNSTGMVV* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5918 215 SUPERFAMILY DNA-binding domain 83 140 IPR016177 GO:0003677
Psa7g5918 215 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Psa7g5918 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 31 196 - -
Psa7g5918 215 CDD AP2 82 141 IPR001471 GO:0003700|GO:0006355
Psa7g5918 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 196 - -
Psa7g5918 215 MobiDBLite consensus disorder prediction 51 70 - -
Psa7g5918 215 Gene3D AP2/ERF domain 82 141 IPR036955 GO:0003700|GO:0006355
Psa7g5918 215 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Psa7g5918 215 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Psa7g5918 215 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Psa7g5918 215 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5918 Psa-Chr7 487023836 487025347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5918 10 146 AP2-EREBP Transcription Factor Family AT1G80580 53.061 4.35e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa7g5918 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5918 - - cam:101490906 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5918 7 487023836 487025347 Psa7g5918 7 487023836 487025347 ECH