Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5916 ATGGAAGAGTTATGGGAAAATTTTCATCTTCATATGGAATTGGATTCCGGTGATGATTACTTGATGGACAAGGTTAACATTGACGACGGTGATGACTTTCTTAGAGAGATTCTGATAGAAACACCACAAAGTGATGTTAACGGCAGTGTTGAGGTTGTTAATAACATGATAAAAAGCAAGAGTTCAGATTCAATAATGTGTGAACAACAACAACAACACCAACAAGAACAATCTAAAAAAGTTGGTGGTCGATGTTGTTTGCCAAAGACATTCATTCTGTCGTTTGATAACTCAACTATCATACCTGCTACTACACCTGAACCTTGTCTCAATTTGAAAGCTAAACGTGGTTCTAAAAACAAACGGAACCGTGAAAGTAGTGAAAACAGTGAAATGATGAAAAGAAATGAACAAAAAGTAGCGAAGAAAGGTAGAAGCGGTTCTCAGTGTATTGATCATATAATAGCAGAGAGAAAACGGAGACAAGAATTGACCGAAAGATTCATCGCACTTTCAGCAACCATTCCTGGTTTGAGCAAGACAGACAAAGCTTCCATACTTCGAGCAGCAATTGATTATGTGAAACATCTTCAAGAACGTGTTCATGAGCTAGAGAAACAAGACAAAAACGTTGGTGTCGCATCGATGATGGTCCTCAAAAAACCGAATGTATGTCAAATTATTAACAATAATGAAGAAGATAAAAATTCTGGTGAGACAAGCAGTGGTGATGATGATGATTATTATTTTAACAAAAATAATATTCTCCCAGAGGTTGAAGCAAGAGTTATGGGAAAGGAAGTGCTTATTGAAATTCATTGTGAGAAACAAATTGGAATTGAGCTTAAAGTACTAAAACACATTGAAAATCTTGAGCTTTTTGTTACTGGTAACAGTGTCTTGCCATTTGGGAAATCAGATATTTCCATTACTATTATTGCTCAGATGGGCGAGGGATACAAAGTGAGAGTGGATGATCTTGTGAAAAGCCTTAGGCGAGTGATTTTGAAATCGGAAATGGGATGTGAAAGTGATCTGTTCTAG 1044 0.3659 MEELWENFHLHMELDSGDDYLMDKVNIDDGDDFLREILIETPQSDVNGSVEVVNNMIKSKSSDSIMCEQQQQHQQEQSKKVGGRCCLPKTFILSFDNSTIIPATTPEPCLNLKAKRGSKNKRNRESSENSEMMKRNEQKVAKKGRSGSQCIDHIIAERKRRQELTERFIALSATIPGLSKTDKASILRAAIDYVKHLQERVHELEKQDKNVGVASMMVLKKPNVCQIINNNEEDKNSGETSSGDDDDYYFNKNNILPEVEARVMGKEVLIEIHCEKQIGIELKVLKHIENLELFVTGNSVLPFGKSDISITIIAQMGEGYKVRVDDLVKSLRRVILKSEMGCESDLF* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5916 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Psa7g5916 347 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 339 - -
Psa7g5916 347 SMART finulus 154 203 IPR011598 GO:0046983
Psa7g5916 347 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Psa7g5916 347 PANTHER BHLH TRANSCRIPTION FACTOR 4 339 - -
Psa7g5916 347 Gene3D - 149 217 IPR036638 GO:0046983
Psa7g5916 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 208 IPR036638 GO:0046983
Psa7g5916 347 MobiDBLite consensus disorder prediction 113 146 - -
Psa7g5916 347 Coils Coil 187 207 - -
Psa7g5916 347 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5916 Psa-Chr7 486947258 486948737 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5916 131 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.439 4.24e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g5916 HLH 8.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5916 - - mtr:MTR_4g009540 390.578