Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5894 ATGGAGTTTCAAACTTGTATTATTACTCCTATTATTAACAATGAGAAACCTGATTCAGAAATTATTACTCCTATTATTAACAATGAGAAACCTGATTCAGAAATTATTACTCCTATTATTAACGATGAGAATCCTGATTCAGGAACACAACCCAATAAGCGGAAGAAAAAGAAGTCTATTGTGTGGGATTACTTCACGGTGGAACCTGTCGTAGCTGGATGTGCCAGAGCTTACTGTAAACAGTGCAAGAAATCGTTTTCTTATATAACTAATTTAAAAGTAGCTGGCACAAGTAATTTGAAGAAGCACATTTCTTTGGGAATCTGTCAAGTAATGCAGCAGAAAAGTCAGCCAAACCCACATTCTGTAAATGGTGTAAATGGTGGTTTGCAGATAAATGGCATTCTACCAAACTCATATCCTGTAAATGGTGGTTTGCAGGTTAATGGCATGCTACCAAACTCACATCCCGTAAATGGTGTAAATGGTGGTTTGCAGGTTAATGGCATTCTACCAAAGAAAAGGCAAAGAGCTACACCTACCTATGCTGGTAAAGGTGTCTCATTTGACCAGGAGCGTTGCAACAATGACATTGCTAAAATGGTAATCTTACATGATTATCCTCTTGATATTGTGGAACAACCTGGTTTCATTGCTTTTGCACAGACTCTTCAACCCCAGTTCAATCCATTGTGTTTGAATTCTTTTGAAGGGTATTGTGTTTCTATGTACCTCAGAGAGAAGCAAAATTTGTTAGATCTTATTAACGGGATTCCTGGACGACTCAACCTAACATTGGACGTGTGGTCATCAAACCAGACAACAGGGTATGTTATTATTAGAGGGCACTTCATTGATAGTGATTCCAACTTGCATCACCCTATTCTCAATGTTGTTACAGTGCCGTTTCTTGATTCTGATGAACTCATAAACCAATCTATAATGACCTGTTTATCTGATTGGCATTTGGAGGGTCGGGTACTTACCCTTGCACTCGATAAGTCTTTCTCAAGTGAGACCGTCAAGGTTAATTTGCGAAGCCATCTCTCTATTAATAACCCTGTGATTCTCAGTGGTCAGTTATTAAACCGGAATTGTTATGCCCGTGTTCTCAGCCGCATTGCAGTAGATGCACTACAGGCAATGAGAGAAACTATTAGCAAAGTTCGCGAGTATGTGAAATTTGTGAAACATTCTGAATCTCACGAAGAGAAGTTTATTGAGCTTAAGCAACAACTACAGGTACCTAGTTTGGTGAACCTATTGATTGATGACCATTATAAATGGGATACAACATACCATATGCTTGTAGCTGCCTGGGAATTAAAGGAAGTCTTTGCTTGCTTGGATACTCGATGTCCTGATTTCGCAATGACTCTAACTATGGATGACTGGAAGCAGATTAAAACTCTTTGCACATATTTGAAACATTTGTATGATGCATCTTACATTTTAACTACCCAACCATATCCAACTGCAAACTTATTTTTTGCCGAAGTGTCGAAACTTCATATGGAGTTGACTATTGCAGCCTTCAGCCAGGATCTTTTTCTTAGTAGTTTGATTTTGCCTTTACTCCAGAACTTTGATCAATATTGGAGAGATAGCTGTCTCATCTTAGCAGTTGCTGTGGCCATGGACCCAAGGCATAAAATGAAACTTGTGGAAACCACATTTGCTAAGATATTTGGAGAGAATGCTGAGCCGTGGATAAGGATAGTCGAGGATGGCCTTCATGAACTATTCATTGAATATAACACTGAAATGCTTCATTTTACCGCAACAAATGGTGGTGGAGAAGGAGATGAGATTATGTTAACAGTAGAGCCATATGAAGGGCCAGTTGATGGTTCTCTTTTTGTCGATGAAGGTGAACTTTCCGACTTTGAGTTTTGTATATCTGATATGGCTTGTTTGCAGCCATTTAAGTCAGAATTGGACGAGTATTTGGAAGAACCTCAACTGTCTGAAGCAACAGAATTCAATATTCTGAATTGGTGGAGGTTAAATCAATCGAAATATCCAACATTGTCTAGAATGGCATCTGATATCTTGTCTATGTCAATATCTACTGTGTCTCCCGATTCTGTTTTTGACACAGGAGTCAGAAAAATGGATAATCACCGAAGTTTGTTAGAATCCCATACACTCGATGCCCTTATTTGTGCAAAGGATTGGTTGCAACATAAATCTTTACCCAAAAATGTTTCAAATATTTGA 2220 0.3847 MEFQTCIITPIINNEKPDSEIITPIINNEKPDSEIITPIINDENPDSGTQPNKRKKKKSIVWDYFTVEPVVAGCARAYCKQCKKSFSYITNLKVAGTSNLKKHISLGICQVMQQKSQPNPHSVNGVNGGLQINGILPNSYPVNGGLQVNGMLPNSHPVNGVNGGLQVNGILPKKRQRATPTYAGKGVSFDQERCNNDIAKMVILHDYPLDIVEQPGFIAFAQTLQPQFNPLCLNSFEGYCVSMYLREKQNLLDLINGIPGRLNLTLDVWSSNQTTGYVIIRGHFIDSDSNLHHPILNVVTVPFLDSDELINQSIMTCLSDWHLEGRVLTLALDKSFSSETVKVNLRSHLSINNPVILSGQLLNRNCYARVLSRIAVDALQAMRETISKVREYVKFVKHSESHEEKFIELKQQLQVPSLVNLLIDDHYKWDTTYHMLVAAWELKEVFACLDTRCPDFAMTLTMDDWKQIKTLCTYLKHLYDASYILTTQPYPTANLFFAEVSKLHMELTIAAFSQDLFLSSLILPLLQNFDQYWRDSCLILAVAVAMDPRHKMKLVETTFAKIFGENAEPWIRIVEDGLHELFIEYNTEMLHFTATNGGGEGDEIMLTVEPYEGPVDGSLFVDEGELSDFEFCISDMACLQPFKSELDEYLEEPQLSEATEFNILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRSLLESHTLDALICAKDWLQHKSLPKNVSNI* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5894 739 Pfam Domain of unknown function (DUF4413) 487 585 IPR025525 GO:0003677
Psa7g5894 739 Pfam hAT family C-terminal dimerisation region 645 727 IPR008906 GO:0046983
Psa7g5894 739 ProSiteProfiles Zinc finger BED-type profile. 56 116 IPR003656 GO:0003677
Psa7g5894 739 PANTHER BED FINGER-RELATED 44 121 IPR045259 -
Psa7g5894 739 PANTHER BED FINGER-RELATED 172 734 IPR045259 -
Psa7g5894 739 SUPERFAMILY beta-beta-alpha zinc fingers 59 108 IPR036236 -
Psa7g5894 739 SUPERFAMILY Ribonuclease H-like 256 728 IPR012337 -
Psa7g5894 739 SMART bed5 56 112 - -
Psa7g5894 739 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 172 734 - -
Psa7g5894 739 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 44 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5894 Psa-Chr7 486088491 486092348 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g5894 DUF4413 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5894 - - gmx:106799409 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5894 7 486088491 486092348 Psa7g5894 7 486088491 486092348 ECH