Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5807 ATGGCCGGTGGTGGTGGTGGTGGTGGCGGTGGTGGTAGTTCATTGACAGGGTTGCAAGAACATGTCAAGTTAGCAAGAGACTACGCTCTTGAAGGTCTCTATGATACTTCCATCATCTTCTTCGATGGCGCTGTTGCACAAATCAACAGGCATCTAAACAGTGTTGACGACCCTTTGATTCGTGCAAAATGGATGAATGTTAAGAAAGCTCTCTCTGAGGAAACTGAAGTTGTAAAGCAACTTGATGCAGATAAAAGGGCGTTTAAAGATAATCCTATTGGAAGACGTCCTCCGTCGCCTCCGATTTCTACTAAATCTTCGTTTGTTTTTCAGCCATTAGATGAGTATCCTACTTCATCGAATTCTTCCTTTGATGATCCTGATGTATGGAGACCACCTAGTAGGGATACTGGAAGTAGAAGACCTGGAAGGGGTGGTCAAGTGAGTAATCGGAAATCTCAACAAGATAGTAAATGGGCTCGAGGTGCTACAACAAAGCCAGGTACCACTGGCCGTGGTGGTGCAAAGGCTGGTGGTGCTACTAGCAAGGTTAACTCAGGGGCCAGGACATCAACTCCGGTAAAGAAAGGTGGTTCGTCGGGAAAGTCTAGCAAGACAGATGCAGTTAATGGTGATGCTGAAGAAGGGAAGTCAAATAAAGGACAATATGAAGGTCCTGACCCTGAATTGGCTGAAATGCTAGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGATGATGTTGCAGGTCTTACTGAAGCAAAAAGGCTTTTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCTTGGAAAGGTGTCCTTATGTTTGGTCCTCCGGGAACTGGAAAGACGCTTCTTGCTAAGGCCGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCAGCTACTTTAGCTTCTAAATGGCGGGGAGAAAGTGAGCGAATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCTTATGCACCAAGTACAATTTTCATAGATGAAATCGATTCTCTATGCAATGCTAGGGGGGCTTCTGGAGAGCATGAATCGTCCCGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAACAGCGGTACAAATGAAGATGGTAGCAAGAAAATAGTAATGGTCTTGGCAGCTACTAACTTTCCATGGGACATTGATGAAGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCAAATTTCGAGAGTCGTAAAGAGTTGATCCGGATAAATTTGAAAACCGTTGAGGTGGCCCCGGATGTCAACATAGATGACGTGGCTCGTCGAACTGATGGCTATAGTGGAGATGATTTAACAAACGTATGTCGCGATGCTTCCTTAAATGGAATGAGACGGAAGATAGCAGGAAAGACACGCGATGAAATTAAGAGTATGTCTAAGGATGATATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGCAAAGGTCCAACGAAGTGTTTCTCCGGCGGATATCGAACGCCATGAGAAGTGGTTTCACGAATTTGGATCAGCATAA 1599 0.4459 MAGGGGGGGGGGSSLTGLQEHVKLARDYALEGLYDTSIIFFDGAVAQINRHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPLDEYPTSSNSSFDDPDVWRPPSRDTGSRRPGRGGQVSNRKSQQDSKWARGATTKPGTTGRGGAKAGGATSKVNSGARTSTPVKKGGSSGKSSKTDAVNGDAEEGKSNKGQYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSGTNEDGSKKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDDVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKSMSKDDISKDPVAMCDFEEALAKVQRSVSPADIERHEKWFHEFGSA* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5807 532 CDD AAA 278 421 - -
Psa7g5807 532 Pfam ATPase family associated with various cellular activities (AAA) 284 421 IPR003959 GO:0005524|GO:0016887
Psa7g5807 532 Gene3D - 242 522 IPR027417 -
Psa7g5807 532 Pfam AAA+ lid domain 443 484 IPR041569 -
Psa7g5807 532 MobiDBLite consensus disorder prediction 117 225 - -
Psa7g5807 532 MobiDBLite consensus disorder prediction 183 207 - -
Psa7g5807 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 517 IPR027417 -
Psa7g5807 532 MobiDBLite consensus disorder prediction 143 164 - -
Psa7g5807 532 Pfam Vps4 C terminal oligomerisation domain 485 530 IPR015415 -
Psa7g5807 532 Gene3D - 422 508 - -
Psa7g5807 532 ProSitePatterns AAA-protein family signature. 393 412 IPR003960 GO:0005524|GO:0016887
Psa7g5807 532 MobiDBLite consensus disorder prediction 208 222 - -
Psa7g5807 532 SMART AAA_5 280 423 IPR003593 -
Psa7g5807 532 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 16 532 IPR028596 GO:0008017|GO:0008568|GO:0051013
Psa7g5807 532 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 14 532 - -
Psa7g5807 532 PANTHER AAA DOMAIN-CONTAINING 14 532 - -
Psa7g5807 532 Gene3D - 13 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5807 Psa-Chr7 483982321 483985288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5807 236 524 Calmodulin-binding Proteins AT3G56690 39.262 3.16e-49 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5807 7 483982321 483985288 Psa7g5807 7 483982321 483985288 ECH