Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5804 ATGGAAAGAGAAGGTTTAGGACTTGAGATAACTGAGCTAAGGTTAGGTTTATCATGTGGTGAGCCAAAGAAGAATGAGAAGAAGAGGATGTTCTCGGAGATCGACGGTGGCGTGGAAGAAAATGGAGGCTCCGGTGATCGGAAAAGTGTCGATAAGAAGAATCAAGTTGTCGGATGGCCTCCGGTGTGCTCGTACCGGAAGAAGAACATGAATGAAGGTTCAAAAATGTATATGAAGGTTAGCATGGATGGAGCTCCTTACTTGCGTAAGATTGATCTTTGTTTGCATAAGGGATACTTGGAGTTAGCTTTGGCTTTGGAGAAGCTCTTTGATTGTTGTGGAATTGAAGAGGCATTAAAGGATGCAGAAAATTGTGAACACGTTCCAATTTATGAGGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGGTCAGATGCAAAGGGCTTTGATTTGCAACCAAAAGGATCTTTGAAGAGATTCATATAG 540 0.4259 MEREGLGLEITELRLGLSCGEPKKNEKKRMFSEIDGGVEENGGSGDRKSVDKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLCLHKGYLELALALEKLFDCCGIEEALKDAENCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKRFI* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5804 179 Gene3D - 69 172 - -
Psa7g5804 179 Pfam AUX/IAA family 46 167 IPR033389 -
Psa7g5804 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 167 IPR003311 GO:0005634|GO:0006355
Psa7g5804 179 MobiDBLite consensus disorder prediction 31 51 - -
Psa7g5804 179 ProSiteProfiles PB1 domain profile. 75 163 IPR000270 GO:0005515
Psa7g5804 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 167 - -
Psa7g5804 179 SUPERFAMILY CAD & PB1 domains 68 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5804 Psa-Chr7 483922644 483925687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5804 67 179 B3 DNA Binding Superfamily AT4G23980 34.513 4.04e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa7g5804 AUX_IAA 4.7e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5804 K14484 - gmx:547784 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5804 7 483922644 483925687 Psa7g5804 7 483922644 483925687 ECH