LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g5743	ATGGGAAAAGAAAAGGTTCATATTAACATTGTTGTCATTGGCCATGTCGACTCTGGGAAGTCAACTACCACTGGTCACTTGATCTACAAGCTTGGCGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTTGACAAGCTCAAGGCTGAACGTGAAAGAGCCGGTATTTCCAAGGATGGCCAGACCGTGAACGCGCTCCTTGCATTCACTCTTGGTGTCAAGCAAATGATTTGTTGCTGCAATAAGATGGATGCTACCACACCCAAGTACTCCAAGGGTAGGTATGATGAAATTGTCAAGGAAGTTGCATCCTATTTGAAGAAGGTTGGCTACAACCCCGACAAAATCCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACAATGTCAATGAGCCTAAGAGGCCATCTGACAAGCCCCTTCGGTTACCACTTCAGGATGTCTACAAGATTGGTGGAATTGGAACTGTGCCTGTGGGGCGTGTTGAGACCGGTACTATAAAACCTGGAATGGTGGTCACTTTTGGGCCAACTGGACTGCAAACTGAAGTCAAGTCTGTGGAGATGCACCATGAAGCTCTCACAGAAGCCCTTCCTGGTGACAATGTCGGATTTAATGTTAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCAGCTAAGGAGGCTGCTAATTTCACATCTCAAGTGATCATCATGAATCACCCTGGCCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTGGTTACCAAGATTGACAGACGTTCTGGTAAAGAGATTGAGAAGGAACCCAAGTTCTTAAAGAATGGTGATGCTGGTATTATTAAGATGGTTCCAACCAAGCCCATGGTGGTTGAGACTTTCTCTCAATATCCGCCACTTGGCCGTTTTGCTGTCAGAGACATGCGTCAAACTGTGGCTGTTGGGGTCATCAAGGCTGTGGAGAAGAAGGAACCCACCGGAGCAGCTAATAAGATAAAGAAGAAATGA	1167	0.467	MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERAGISKDGQTVNALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVASYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDNVNEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKPGMVVTFGPTGLQTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKAVEKKEPTGAANKIKKK*	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g5743	388	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	3	193	IPR027417	-
	Psa7g5743	388	SUPERFAMILY	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	270	373	IPR009001	-
	Psa7g5743	388	Gene3D	Translation factors	173	260	-	-
	Psa7g5743	388	Gene3D	-	72	170	IPR027417	-
	Psa7g5743	388	SUPERFAMILY	Translation proteins	175	265	IPR009000	-
	Psa7g5743	388	Pfam	Elongation factor Tu C-terminal domain	265	373	IPR004160	-
	Psa7g5743	388	CDD	EF1_alpha_II	174	264	-	-
	Psa7g5743	388	Pfam	Elongation factor Tu domain 2	192	257	IPR004161	GO:0005525
	Psa7g5743	388	CDD	EF1_alpha_III	267	370	-	-
	Psa7g5743	388	PANTHER	TRANSLATION FACTOR	70	382	-	-
	Psa7g5743	388	PANTHER	TRANSLATION FACTOR	1	69	-	-
	Psa7g5743	388	PANTHER	ELONGATION FACTOR 1-ALPHA-LIKE	1	69	-	-
	Psa7g5743	388	PANTHER	ELONGATION FACTOR 1-ALPHA-LIKE	70	382	-	-
	Psa7g5743	388	Gene3D	-	1	71	IPR027417	-
	Psa7g5743	388	Pfam	Elongation factor Tu GTP binding domain	81	166	IPR000795	GO:0003924\|GO:0005525
	Psa7g5743	388	Pfam	Elongation factor Tu GTP binding domain	6	73	IPR000795	GO:0003924\|GO:0005525
	Psa7g5743	388	Gene3D	Translation factors	267	374	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g5743	Psa-Chr7	482079018	482080423	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g5743	1	381	Eukaryotic Initiation Factors Gene Family	AT5G60390	76.256	0.0	655

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g5743	K03231		-	gmx:110008577	602.053