LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g5711	ATGAAGTTATTTCTCTTAGTTTTCTTTCTTCTCTGCTTTCATTTTCTCTTCATCTTCACACTTTCTCTCTCCTCTGATGGTCTCGCACTTCTCTCTCTAAAATCCGCCGTGGATCAATCCGGCGACGGAGCTTTCTCTGACTGGAATGGCGGCGATTCTTATCCTTGCGGTTGGTCGGGGATCTCCTGTGCGAATATCTCTGGTATCCCGGAGCCACGAGTCGTCGGAATTGCTCTCGCCGGGAAGTCTCTCCGCGGCTACCTTCCTTCGGAGCTTGGTACGCTTCGATATCTTCGCCGTCTTAATCTCCATGATAATGAATTCTATGGTGTTGTGCCAATGCAGTTGCTTAATGCTACTGCACTTCATAGTATTTTTCTTCACCGGAATAATCTCTCCGGTCCATTTCCGGCTTCTGTTTGTACCATTCCACGTCTCCAGAATCTTGATCTCTCTGTTAATTCCTTTTCCGGCAACATTCCTGATGATGTTAAGAAATGTAAGCAGCTTCAGAGGCTTATTCTAGCAAGGAACAAGTTCACCGGAGAGATTCCGACCGGAGTGTGGTCCGAACTCGATAACCTCATCCAACTCGACCTCTCTGCTAATGATTTCAAAGGTTCAATTCCGGATGATATAGGTGACCTTGTTTCCCTCTCCGGTACTCTAAACCTCTCATTCAACCACTTTTCCGATCGAATTCCAAGCTCACTTGGGAAATTACCCGCCACCGTGAACTTTGACCTACGAAACAATAACCTAATCGGCGAGATTCCACAAACAGGAACATTTTCAAACCAGGGACCAACTGCATTCCTCGGTAACAAAAACCTGTGCGGACTTCCACTAAGAAAATCCTGCGCAGGTTCTGGCTCGTCTTCTCACAAAGACGAGCCAGGTAACCGTTCGAAAGGGTTGAGTCCCGGTTTGATTATTTTGATCTCAGCAGCTGATGTTGTTGGGGTCGCACTTGTTGGACTTGTGATTGTTTATGTATATTGGAAGAAGAAAGATGATGAGAATGCATGTAGTTGCATAAGGAAAAGAAGATTTGGTGATGAGAATGAGAATGAGAAACGGAGTGCTTGTACTTTACTTCCATGTATGAATGGTTTGAAGAATGAAGAAGGTAATGATGAGAGTGAAGTGGAGGGAGATGGAGGGAAAGGAGAAGGTGAATTGGTGACAATTGATAAAGGTTTTAGGATTGAGCTTGATGAGCTTTTGAAGGCATCAGCATATGTGTTGGGGAAGAGTGCTTTAGGAATTGTGTATAAGGTGGTGCTTGGAAATGGGGTGCCGGTTGCGGTGAGGAGATTAGGGGAGGGTGGAGAAGAGAGGTATAAGGAGTTTGTGGCTGAGGTGCAAGCCATTGGGAAGGTGAAGCATCCTAATATTGTGAGGTTGAGAGCTTATTATTGGGCTCATGATGAAAAGCTTCTCATTAGTGATTTCATCTCCAATGGCAATTTGGCGAATGCACTTCGAGGTAGAAATGGCCAACCATCTTCAAACCTTTCATGGTCAACAAGGTTAAGAATTTCAAAAGGAATAGCAAGAGGCTTATCCTATCTTCATGAATTTAGTCCTAGAAAATTTGTCCATGGTGACATAAAACTCACAAACATCCTGCTTGACAACGACTTACAACCCTACATTTCCGATTTCGGTCTCAACCGACTAATCAGCATCACAGGAAACAACCCTTCGGTTGGCGGATTCATGGGCGGAGCACTACCTTACATGATGAAAACATCGCACAAAGATGTTAATAGAACGAATAACAGGTTGTCATTAGACAATAGTCGTGGTAGTAACAATTACAAAGCACCCGAGGCTCGCGTGCCCGGTTGTAGACCAACGCAGAAATGGGATGTTTATTCATTAGGCGTCGTTTTGCTTGAGTTGTTAACTGGGAAATCTACGGAATCTTCTCCCACGTCCGCATCTTCATCGGCTTCCGTTGAAGTTTCTGACTTGGTAAGATGGGTGCGAAATGGATTTGATCAAGAAAGTCCATTATCTGAAATGGTTGATCCGTCGCTGTTACAAGAAGTTCGCGCTAAGAAAGAGGTTTTGGCTGTGTTTCATGTTGCACTTGCTTGTACTGAAGGTGATCCTGAAGTTAGGCCTAGAATGAAAACTGTGTCTGAAAATCTTGAAAGAATTGGAAGGTAA	2178	0.4431	MKLFLLVFFLLCFHFLFIFTLSLSSDGLALLSLKSAVDQSGDGAFSDWNGGDSYPCGWSGISCANISGIPEPRVVGIALAGKSLRGYLPSELGTLRYLRRLNLHDNEFYGVVPMQLLNATALHSIFLHRNNLSGPFPASVCTIPRLQNLDLSVNSFSGNIPDDVKKCKQLQRLILARNKFTGEIPTGVWSELDNLIQLDLSANDFKGSIPDDIGDLVSLSGTLNLSFNHFSDRIPSSLGKLPATVNFDLRNNNLIGEIPQTGTFSNQGPTAFLGNKNLCGLPLRKSCAGSGSSSHKDEPGNRSKGLSPGLIILISAADVVGVALVGLVIVYVYWKKKDDENACSCIRKRRFGDENENEKRSACTLLPCMNGLKNEEGNDESEVEGDGGKGEGELVTIDKGFRIELDELLKASAYVLGKSALGIVYKVVLGNGVPVAVRRLGEGGEERYKEFVAEVQAIGKVKHPNIVRLRAYYWAHDEKLLISDFISNGNLANALRGRNGQPSSNLSWSTRLRISKGIARGLSYLHEFSPRKFVHGDIKLTNILLDNDLQPYISDFGLNRLISITGNNPSVGGFMGGALPYMMKTSHKDVNRTNNRLSLDNSRGSNNYKAPEARVPGCRPTQKWDVYSLGVVLLELLTGKSTESSPTSASSSASVEVSDLVRWVRNGFDQESPLSEMVDPSLLQEVRAKKEVLAVFHVALACTEGDPEVRPRMKTVSENLERIGR*	726

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g5711	725	Pfam	Leucine rich repeat N-terminal domain	24	63	IPR013210	-
	Psa7g5711	725	Pfam	Protein kinase domain	415	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa7g5711	725	Gene3D	Transferase(Phosphotransferase) domain 1	486	725	-	-
	Psa7g5711	725	Pfam	DNA binding protein S1FA	302	337	IPR006779	GO:0003677\|GO:0005634\|GO:0006355
	Psa7g5711	725	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	533	545	IPR008271	GO:0004672\|GO:0006468
	Psa7g5711	725	SUPERFAMILY	Protein kinase-like (PK-like)	415	720	IPR011009	-
	Psa7g5711	725	ProSiteProfiles	Protein kinase domain profile.	410	723	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa7g5711	725	Gene3D	Ribonuclease Inhibitor	192	289	IPR032675	-
	Psa7g5711	725	SMART	serkin_6	410	723	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa7g5711	725	Gene3D	Ribonuclease Inhibitor	22	191	IPR032675	-
	Psa7g5711	725	Gene3D	Phosphorylase Kinase; domain 1	399	485	-	-
	Psa7g5711	725	SUPERFAMILY	L domain-like	25	284	-	-
	Psa7g5711	725	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	5	724	-	-
	Psa7g5711	725	PANTHER	-	5	724	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g5711	Psa-Chr7	481210177	481214218	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g5711	20	723	Receptor kinase-like Gene Family	AT1G67510	65.698	0.0	913

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Psa7g5711		Pkinase	3.6e-31	CL0016
	TF	S1Fa-like	Psa7g5711		Pkinase	3.6e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa7g5711	-		-	gmx:100787556	1046.19